miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16101 3' -54.3 NC_004065.1 + 197543 0.66 0.987949
Target:  5'- -aGGGGACGAUCGUaucgcagaaaaacugCCgUCg-GCGGCa -3'
miRNA:   3'- ggCCCCUGCUAGUA---------------GGgAGgaUGUUG- -5'
16101 3' -54.3 NC_004065.1 + 82637 0.66 0.987949
Target:  5'- uCCGGGGGCgaaccucugcgcccaGAagcgggucUCGUgCCUCCUggccgagaggcGCAGCa -3'
miRNA:   3'- -GGCCCCUG---------------CU--------AGUAgGGAGGA-----------UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 22043 0.66 0.987361
Target:  5'- cCCGGGcaggccGCGGU-AUCCCUCCggucggucGCGGCg -3'
miRNA:   3'- -GGCCCc-----UGCUAgUAGGGAGGa-------UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 125689 0.66 0.987361
Target:  5'- gCCGGcaGAgcgcccugaccCGAUCAUCCC-CCUGgGGCg -3'
miRNA:   3'- -GGCCc-CU-----------GCUAGUAGGGaGGAUgUUG- -5'
16101 3' -54.3 NC_004065.1 + 17958 0.66 0.987361
Target:  5'- gUCGccGGACGGUCGUCCgUCUgccgcGCGACc -3'
miRNA:   3'- -GGCc-CCUGCUAGUAGGgAGGa----UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 140955 0.66 0.987361
Target:  5'- aCCGGGGAgaacuggaCGAUagCGUCUa--CUGCAACa -3'
miRNA:   3'- -GGCCCCU--------GCUA--GUAGGgagGAUGUUG- -5'
16101 3' -54.3 NC_004065.1 + 102572 0.66 0.985794
Target:  5'- cCCGGGGA-GAUCGacgagauuUUgCUCC-GCGACg -3'
miRNA:   3'- -GGCCCCUgCUAGU--------AGgGAGGaUGUUG- -5'
16101 3' -54.3 NC_004065.1 + 99865 0.66 0.985794
Target:  5'- gCCGGGGucGCGGauagcgacggccUCGUCCUUCCUc---- -3'
miRNA:   3'- -GGCCCC--UGCU------------AGUAGGGAGGAuguug -5'
16101 3' -54.3 NC_004065.1 + 175391 0.66 0.984082
Target:  5'- -aGGcGGACGAcgAUCCCccaccgUCCUACGAg -3'
miRNA:   3'- ggCC-CCUGCUagUAGGG------AGGAUGUUg -5'
16101 3' -54.3 NC_004065.1 + 90132 0.66 0.982218
Target:  5'- gCCGGaGGccccGCGGccaccUCGUCCgUCCUGCcGCc -3'
miRNA:   3'- -GGCC-CC----UGCU-----AGUAGGgAGGAUGuUG- -5'
16101 3' -54.3 NC_004065.1 + 130143 0.66 0.980195
Target:  5'- cCUGaGGG-UGAUCAUCCCUuuccccCCUcgcACGGCg -3'
miRNA:   3'- -GGC-CCCuGCUAGUAGGGA------GGA---UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 54641 0.66 0.980195
Target:  5'- -gGGGGAUcGUCGUCCg-CCUGCuGCc -3'
miRNA:   3'- ggCCCCUGcUAGUAGGgaGGAUGuUG- -5'
16101 3' -54.3 NC_004065.1 + 199907 0.66 0.980195
Target:  5'- cCCGGGGguguguagcAgGAUCGUCCgUCCcugACAc- -3'
miRNA:   3'- -GGCCCC---------UgCUAGUAGGgAGGa--UGUug -5'
16101 3' -54.3 NC_004065.1 + 198243 0.67 0.978005
Target:  5'- aUCGGGGGCGAggaggacacCAUacucaCCUCgUGCGAUc -3'
miRNA:   3'- -GGCCCCUGCUa--------GUAg----GGAGgAUGUUG- -5'
16101 3' -54.3 NC_004065.1 + 79198 0.67 0.978005
Target:  5'- aUCGGGcaGACGAUCcaCCagaUCCUGCGAg -3'
miRNA:   3'- -GGCCC--CUGCUAGuaGGg--AGGAUGUUg -5'
16101 3' -54.3 NC_004065.1 + 38220 0.67 0.976608
Target:  5'- cCCGGGGGgGugggAUCCCUCCggcuugucguucgaACAGCc -3'
miRNA:   3'- -GGCCCCUgCuag-UAGGGAGGa-------------UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 150703 0.67 0.975641
Target:  5'- uUGGGGAucuCGAgcUCGUCCaccuUCCUcuGCAGCa -3'
miRNA:   3'- gGCCCCU---GCU--AGUAGGg---AGGA--UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 29309 0.67 0.975641
Target:  5'- aCGGGG-CGGUUuUCCC-CUgugACGACa -3'
miRNA:   3'- gGCCCCuGCUAGuAGGGaGGa--UGUUG- -5'
16101 3' -54.3 NC_004065.1 + 177505 0.67 0.975395
Target:  5'- gCCGGGGGucagUAUCCCUUgccucgguuucaaCUACAGCa -3'
miRNA:   3'- -GGCCCCUgcuaGUAGGGAG-------------GAUGUUG- -5'
16101 3' -54.3 NC_004065.1 + 136226 0.67 0.973097
Target:  5'- gCCGGGGcugGgGAagGUCuCCUCCaccgACGACg -3'
miRNA:   3'- -GGCCCC---UgCUagUAG-GGAGGa---UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.