miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16101 5' -59.8 NC_004065.1 + 94390 0.66 0.874486
Target:  5'- cGGCgaGCUGUC-GGCUGGUgGCgCCGUa -3'
miRNA:   3'- uCUGg-CGAUAGcCCGGCUAgCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 158369 0.66 0.874486
Target:  5'- -uGCUGCUGagGaGGCCcuUCGuCCCGCg -3'
miRNA:   3'- ucUGGCGAUagC-CCGGcuAGC-GGGCG- -5'
16101 5' -59.8 NC_004065.1 + 130791 0.66 0.874486
Target:  5'- cAGG-CGUUcgCGaGGCgGAUCGCCUGg -3'
miRNA:   3'- -UCUgGCGAuaGC-CCGgCUAGCGGGCg -5'
16101 5' -59.8 NC_004065.1 + 151524 0.66 0.874486
Target:  5'- gAGGCCGCUGccggcCGGGCgGuGUCGggCGCg -3'
miRNA:   3'- -UCUGGCGAUa----GCCCGgC-UAGCggGCG- -5'
16101 5' -59.8 NC_004065.1 + 94386 0.66 0.874486
Target:  5'- uAGGUCGCUGUC-GGCCGAg-GCaCUGCu -3'
miRNA:   3'- -UCUGGCGAUAGcCCGGCUagCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 63688 0.66 0.874486
Target:  5'- gAGAcucucCCGCacgaagaagCGGGCCguGAUCGCCUGg -3'
miRNA:   3'- -UCU-----GGCGaua------GCCCGG--CUAGCGGGCg -5'
16101 5' -59.8 NC_004065.1 + 102871 0.66 0.874486
Target:  5'- gAGACCGaga--GGG-CGAUCGCCgcCGCc -3'
miRNA:   3'- -UCUGGCgauagCCCgGCUAGCGG--GCG- -5'
16101 5' -59.8 NC_004065.1 + 166934 0.66 0.867567
Target:  5'- cGGCaCGCUAcagcgacUGGGCUGGUucUGCUCGCg -3'
miRNA:   3'- uCUG-GCGAUa------GCCCGGCUA--GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 36152 0.66 0.867567
Target:  5'- cGAUCGCUAguccagCGGcGCUGugucagcCGCUCGCg -3'
miRNA:   3'- uCUGGCGAUa-----GCC-CGGCua-----GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 133975 0.66 0.867567
Target:  5'- -aGCCuaUAUCGgcGGCCGGg-GCCCGUg -3'
miRNA:   3'- ucUGGcgAUAGC--CCGGCUagCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 110191 0.66 0.867567
Target:  5'- cGGCCGCga-CGcGCCGc-CGCCCGUc -3'
miRNA:   3'- uCUGGCGauaGCcCGGCuaGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 154120 0.66 0.867567
Target:  5'- gGGAUCGUgUGUCcacauGGGaCGAUCGCCCcggGCg -3'
miRNA:   3'- -UCUGGCG-AUAG-----CCCgGCUAGCGGG---CG- -5'
16101 5' -59.8 NC_004065.1 + 45715 0.66 0.867567
Target:  5'- aAGuACCGCUAU-GGGCgGG-CGCCaaugGCg -3'
miRNA:   3'- -UC-UGGCGAUAgCCCGgCUaGCGGg---CG- -5'
16101 5' -59.8 NC_004065.1 + 28521 0.66 0.864747
Target:  5'- gGGACUGCUGaagaucuucaccgCGGGCCGucggGUCGaCCGg -3'
miRNA:   3'- -UCUGGCGAUa------------GCCCGGC----UAGCgGGCg -5'
16101 5' -59.8 NC_004065.1 + 92163 0.66 0.86046
Target:  5'- cGA-CGCUGUCGGcGgCGAUCGa-CGCg -3'
miRNA:   3'- uCUgGCGAUAGCC-CgGCUAGCggGCG- -5'
16101 5' -59.8 NC_004065.1 + 695 0.66 0.86046
Target:  5'- cGACCGCc--CGGGUuuCGAgaUGCCCGUc -3'
miRNA:   3'- uCUGGCGauaGCCCG--GCUa-GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 67562 0.66 0.86046
Target:  5'- cGGCCGCg--CGaGGCCu-UCGCCgaagCGCa -3'
miRNA:   3'- uCUGGCGauaGC-CCGGcuAGCGG----GCG- -5'
16101 5' -59.8 NC_004065.1 + 91831 0.66 0.86046
Target:  5'- aGGAgCGgggGUCGuuCUGGUCGCCCGCg -3'
miRNA:   3'- -UCUgGCga-UAGCccGGCUAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 162083 0.66 0.853171
Target:  5'- cGACUGCguggCGGuGCggaaaugcuCGAUCGUCUGCa -3'
miRNA:   3'- uCUGGCGaua-GCC-CG---------GCUAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 129418 0.66 0.853171
Target:  5'- gGGGCUGCUGaagcugugcgccUCGGaCCGGUaCGUgCCGCg -3'
miRNA:   3'- -UCUGGCGAU------------AGCCcGGCUA-GCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.