miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16101 5' -59.8 NC_004065.1 + 188610 0.66 0.853171
Target:  5'- cGGuCCGUca-CGGGaCCGuGUCGCCgGCg -3'
miRNA:   3'- -UCuGGCGauaGCCC-GGC-UAGCGGgCG- -5'
16101 5' -59.8 NC_004065.1 + 98667 0.66 0.838065
Target:  5'- cGGuuGCUGaCGGGggGGaCGCCCGCg -3'
miRNA:   3'- uCUggCGAUaGCCCggCUaGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 7205 0.66 0.845704
Target:  5'- uGGCCGcCUAgcggcuucUCGGGCCucGUCGUgUGCg -3'
miRNA:   3'- uCUGGC-GAU--------AGCCCGGc-UAGCGgGCG- -5'
16101 5' -59.8 NC_004065.1 + 110191 0.66 0.867567
Target:  5'- cGGCCGCga-CGcGCCGc-CGCCCGUc -3'
miRNA:   3'- uCUGGCGauaGCcCGGCuaGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 221733 0.66 0.853171
Target:  5'- cGACCGCUAacacCGcGGCCccGAUCaGUCCGa -3'
miRNA:   3'- uCUGGCGAUa---GC-CCGG--CUAG-CGGGCg -5'
16101 5' -59.8 NC_004065.1 + 199876 0.66 0.851692
Target:  5'- -uGCCGCacagcacgaGcGGCCGGUCGCCCu- -3'
miRNA:   3'- ucUGGCGauag-----C-CCGGCUAGCGGGcg -5'
16101 5' -59.8 NC_004065.1 + 158369 0.66 0.874486
Target:  5'- -uGCUGCUGagGaGGCCcuUCGuCCCGCg -3'
miRNA:   3'- ucUGGCGAUagC-CCGGcuAGC-GGGCG- -5'
16101 5' -59.8 NC_004065.1 + 63688 0.66 0.874486
Target:  5'- gAGAcucucCCGCacgaagaagCGGGCCguGAUCGCCUGg -3'
miRNA:   3'- -UCU-----GGCGaua------GCCCGG--CUAGCGGGCg -5'
16101 5' -59.8 NC_004065.1 + 154120 0.66 0.867567
Target:  5'- gGGAUCGUgUGUCcacauGGGaCGAUCGCCCcggGCg -3'
miRNA:   3'- -UCUGGCG-AUAG-----CCCgGCUAGCGGG---CG- -5'
16101 5' -59.8 NC_004065.1 + 29116 0.66 0.845704
Target:  5'- gGGACa-CUuggGaGGCCGGUCGCCCaGCg -3'
miRNA:   3'- -UCUGgcGAuagC-CCGGCUAGCGGG-CG- -5'
16101 5' -59.8 NC_004065.1 + 168015 0.66 0.838065
Target:  5'- cGACgCGUc-UCGGGCCGGUucugUGUUCGCg -3'
miRNA:   3'- uCUG-GCGauAGCCCGGCUA----GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 76674 0.66 0.838065
Target:  5'- cGGAUCGC-GUCGGcGCCGccGUC-CCCGa -3'
miRNA:   3'- -UCUGGCGaUAGCC-CGGC--UAGcGGGCg -5'
16101 5' -59.8 NC_004065.1 + 202556 0.66 0.845704
Target:  5'- gGGACCGUgacgAUCGGaCCG-UC-CCCGUu -3'
miRNA:   3'- -UCUGGCGa---UAGCCcGGCuAGcGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 199653 0.66 0.838065
Target:  5'- cGGCCGUUuucauUgGGGCCGAUCa--CGCg -3'
miRNA:   3'- uCUGGCGAu----AgCCCGGCUAGcggGCG- -5'
16101 5' -59.8 NC_004065.1 + 133975 0.66 0.867567
Target:  5'- -aGCCuaUAUCGgcGGCCGGg-GCCCGUg -3'
miRNA:   3'- ucUGGcgAUAGC--CCGGCUagCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 142404 0.66 0.845704
Target:  5'- -cGCuCGCg--CGGGCCaucuuUCGCCUGCc -3'
miRNA:   3'- ucUG-GCGauaGCCCGGcu---AGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 206746 0.66 0.838065
Target:  5'- aAGGCCGCggcuaCGGGCgccaGUCGUaCCGCg -3'
miRNA:   3'- -UCUGGCGaua--GCCCGgc--UAGCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 91831 0.66 0.86046
Target:  5'- aGGAgCGgggGUCGuuCUGGUCGCCCGCg -3'
miRNA:   3'- -UCUgGCga-UAGCccGGCUAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 40115 0.66 0.845704
Target:  5'- cGGCCGCUAUauuggUGGuGgCGAUC-UCCGCg -3'
miRNA:   3'- uCUGGCGAUA-----GCC-CgGCUAGcGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 94386 0.66 0.874486
Target:  5'- uAGGUCGCUGUC-GGCCGAg-GCaCUGCu -3'
miRNA:   3'- -UCUGGCGAUAGcCCGGCUagCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.