miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16101 5' -59.8 NC_004065.1 + 114672 1.1 0.001952
Target:  5'- gAGACCGCUAUCGGGCCGAUCGCCCGCc -3'
miRNA:   3'- -UCUGGCGAUAGCCCGGCUAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 113523 0.79 0.235298
Target:  5'- gAGGCCGgacucuuCUGUCuGGGCCGGcucagcUCGCCCGCc -3'
miRNA:   3'- -UCUGGC-------GAUAG-CCCGGCU------AGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 80299 0.78 0.246812
Target:  5'- uGGACCGCUAUgaguccgaGGGCCGGcgCGgCCGCg -3'
miRNA:   3'- -UCUGGCGAUAg-------CCCGGCUa-GCgGGCG- -5'
16101 5' -59.8 NC_004065.1 + 1003 0.77 0.301486
Target:  5'- -aGCCGCUGUCGGGagaCGAgcgUGCcCCGCa -3'
miRNA:   3'- ucUGGCGAUAGCCCg--GCUa--GCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 23634 0.76 0.328631
Target:  5'- cGGGCgGCUGgccUCGGGCCGAcgcaggaGCCCGUu -3'
miRNA:   3'- -UCUGgCGAU---AGCCCGGCUag-----CGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 61441 0.76 0.342866
Target:  5'- -cGCaGCUAgcacUCGGGCCGAgaCGCCCGCu -3'
miRNA:   3'- ucUGgCGAU----AGCCCGGCUa-GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 109893 0.74 0.428841
Target:  5'- cGGCCGC-GUCGGGgggucCCGGcUCGUCCGCc -3'
miRNA:   3'- uCUGGCGaUAGCCC-----GGCU-AGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 158152 0.73 0.454405
Target:  5'- -aGCCGuCUGUCGcGCUGGUCGgCCGCg -3'
miRNA:   3'- ucUGGC-GAUAGCcCGGCUAGCgGGCG- -5'
16101 5' -59.8 NC_004065.1 + 91817 0.73 0.498759
Target:  5'- cAGAgCGCgGUCGagacGUCGGUCGCCCGUg -3'
miRNA:   3'- -UCUgGCGaUAGCc---CGGCUAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 129551 0.72 0.517038
Target:  5'- -aGCCGUccgAUCGGGCCGAU-GCCgGUg -3'
miRNA:   3'- ucUGGCGa--UAGCCCGGCUAgCGGgCG- -5'
16101 5' -59.8 NC_004065.1 + 130358 0.72 0.517038
Target:  5'- cGGA-CGCUGUCGGcGCCGcgcCGCCgGCu -3'
miRNA:   3'- -UCUgGCGAUAGCC-CGGCua-GCGGgCG- -5'
16101 5' -59.8 NC_004065.1 + 12477 0.72 0.525351
Target:  5'- cGACCGCUucaaaugAUUGGGuUCGuacaucuguAUCGCCCGCc -3'
miRNA:   3'- uCUGGCGA-------UAGCCC-GGC---------UAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 123764 0.72 0.544938
Target:  5'- cGGugCGCcg-CGcGCCGGUCGCCUGUc -3'
miRNA:   3'- -UCugGCGauaGCcCGGCUAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 63825 0.72 0.544938
Target:  5'- --cCCGCUucAUCGGGCCGAagcugcugacguUCGCcauggCCGCg -3'
miRNA:   3'- ucuGGCGA--UAGCCCGGCU------------AGCG-----GGCG- -5'
16101 5' -59.8 NC_004065.1 + 127990 0.72 0.554349
Target:  5'- cGGCCGCcg-CGGGUCaccgaGGUgGCCCGCc -3'
miRNA:   3'- uCUGGCGauaGCCCGG-----CUAgCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 188506 0.71 0.563807
Target:  5'- uAGGCCGCgacUCuGGCgGGacCGCCCGCg -3'
miRNA:   3'- -UCUGGCGau-AGcCCGgCUa-GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 170921 0.71 0.582845
Target:  5'- aGGGCgGCauagUAUCGGGUCGAgUGUCUGCg -3'
miRNA:   3'- -UCUGgCG----AUAGCCCGGCUaGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 199867 0.71 0.592414
Target:  5'- -aGCCGCUAcaUCccgcggcuGGGuCCGGUCGCuCCGCc -3'
miRNA:   3'- ucUGGCGAU--AG--------CCC-GGCUAGCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 196238 0.71 0.592414
Target:  5'- cGuCCGCaUGUCGGGCCGAaagCGguCCCGg -3'
miRNA:   3'- uCuGGCG-AUAGCCCGGCUa--GC--GGGCg -5'
16101 5' -59.8 NC_004065.1 + 115043 0.71 0.611623
Target:  5'- cGGCCGCca--GGGCCGAgggcaacggCGCgCGCg -3'
miRNA:   3'- uCUGGCGauagCCCGGCUa--------GCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.