miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16101 5' -59.8 NC_004065.1 + 695 0.66 0.86046
Target:  5'- cGACCGCc--CGGGUuuCGAgaUGCCCGUc -3'
miRNA:   3'- uCUGGCGauaGCCCG--GCUa-GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 999 0.66 0.853171
Target:  5'- uGAgCGCUG-CGggaGGCCGAgugcgcgaucUCGCuCCGCg -3'
miRNA:   3'- uCUgGCGAUaGC---CCGGCU----------AGCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 1003 0.77 0.301486
Target:  5'- -aGCCGCUGUCGGGagaCGAgcgUGCcCCGCa -3'
miRNA:   3'- ucUGGCGAUAGCCCg--GCUa--GCG-GGCG- -5'
16101 5' -59.8 NC_004065.1 + 6160 0.66 0.853171
Target:  5'- cGGCCGagaUGgcCGGGCCGggCGgCCGa -3'
miRNA:   3'- uCUGGCg--AUa-GCCCGGCuaGCgGGCg -5'
16101 5' -59.8 NC_004065.1 + 6493 0.67 0.805914
Target:  5'- -aACCGCacgGUCGGGUCGcg-GCCgGCa -3'
miRNA:   3'- ucUGGCGa--UAGCCCGGCuagCGGgCG- -5'
16101 5' -59.8 NC_004065.1 + 6749 0.67 0.805914
Target:  5'- cGGCgGCacUCGGGUCGGUC-CUCGUg -3'
miRNA:   3'- uCUGgCGauAGCCCGGCUAGcGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 7205 0.66 0.845704
Target:  5'- uGGCCGcCUAgcggcuucUCGGGCCucGUCGUgUGCg -3'
miRNA:   3'- uCUGGC-GAU--------AGCCCGGc-UAGCGgGCG- -5'
16101 5' -59.8 NC_004065.1 + 12477 0.72 0.525351
Target:  5'- cGACCGCUucaaaugAUUGGGuUCGuacaucuguAUCGCCCGCc -3'
miRNA:   3'- uCUGGCGA-------UAGCCC-GGC---------UAGCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 22049 0.68 0.762643
Target:  5'- cAGGCCGCggUAUCccuccGGUCGGUCGCggcggcccaacCCGCg -3'
miRNA:   3'- -UCUGGCG--AUAGc----CCGGCUAGCG-----------GGCG- -5'
16101 5' -59.8 NC_004065.1 + 22231 0.69 0.707418
Target:  5'- uGACCGUcAUCGuGCCGG-CGCCCa- -3'
miRNA:   3'- uCUGGCGaUAGCcCGGCUaGCGGGcg -5'
16101 5' -59.8 NC_004065.1 + 22523 0.69 0.726134
Target:  5'- cGACCGCUAUCGcGCCGcgaGUCUGg -3'
miRNA:   3'- uCUGGCGAUAGCcCGGCuagCGGGCg -5'
16101 5' -59.8 NC_004065.1 + 23263 0.67 0.788973
Target:  5'- gGGACCGacg-CGGuaCGAcuggCGCCCGUa -3'
miRNA:   3'- -UCUGGCgauaGCCcgGCUa---GCGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 23634 0.76 0.328631
Target:  5'- cGGGCgGCUGgccUCGGGCCGAcgcaggaGCCCGUu -3'
miRNA:   3'- -UCUGgCGAU---AGCCCGGCUag-----CGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 25591 0.67 0.814178
Target:  5'- gAGGCgGCUGagcagCaGGCCGAUCucgaugggGCCUGCc -3'
miRNA:   3'- -UCUGgCGAUa----GcCCGGCUAG--------CGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 26958 0.67 0.79751
Target:  5'- cGGCCGCgg-CGGGCUccggaGCUCGCc -3'
miRNA:   3'- uCUGGCGauaGCCCGGcuag-CGGGCG- -5'
16101 5' -59.8 NC_004065.1 + 28521 0.66 0.864747
Target:  5'- gGGACUGCUGaagaucuucaccgCGGGCCGucggGUCGaCCGg -3'
miRNA:   3'- -UCUGGCGAUa------------GCCCGGC----UAGCgGGCg -5'
16101 5' -59.8 NC_004065.1 + 29116 0.66 0.845704
Target:  5'- gGGACa-CUuggGaGGCCGGUCGCCCaGCg -3'
miRNA:   3'- -UCUGgcGAuagC-CCGGCUAGCGGG-CG- -5'
16101 5' -59.8 NC_004065.1 + 29800 0.67 0.814178
Target:  5'- cGGGCCGUUAcacgcugcUC-GGCCaGGUCGUCCGg -3'
miRNA:   3'- -UCUGGCGAU--------AGcCCGG-CUAGCGGGCg -5'
16101 5' -59.8 NC_004065.1 + 30468 0.67 0.788973
Target:  5'- uGGACCGCggcacgAUgGGGCg---CGCCCGg -3'
miRNA:   3'- -UCUGGCGa-----UAgCCCGgcuaGCGGGCg -5'
16101 5' -59.8 NC_004065.1 + 30542 0.66 0.853171
Target:  5'- gAGACguaCGUgaucuUCGGcuGCCGcAUCGUCCGCg -3'
miRNA:   3'- -UCUG---GCGau---AGCC--CGGC-UAGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.