miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16103 3' -64.5 NC_004065.1 + 62472 0.66 0.685649
Target:  5'- cGGCGaCG-GC-AGGA-GCGGCCgcggCGGUa -3'
miRNA:   3'- -CCGC-GCgCGcUCCUgCGCCGGa---GCCA- -5'
16103 3' -64.5 NC_004065.1 + 85789 0.66 0.685649
Target:  5'- cGGCGaccgagGCGCGAGaAC-CGGCgUCGGc -3'
miRNA:   3'- -CCGCg-----CGCGCUCcUGcGCCGgAGCCa -5'
16103 3' -64.5 NC_004065.1 + 111915 0.66 0.684725
Target:  5'- cGCGCG-GCGAcgagagacgccauGGGCGCcGCCgucgCGGUg -3'
miRNA:   3'- cCGCGCgCGCU-------------CCUGCGcCGGa---GCCA- -5'
16103 3' -64.5 NC_004065.1 + 106367 0.66 0.676394
Target:  5'- aGCGCGCcacguGCGAGGugauccugACGcCGGUgUCGGc -3'
miRNA:   3'- cCGCGCG-----CGCUCC--------UGC-GCCGgAGCCa -5'
16103 3' -64.5 NC_004065.1 + 18597 0.66 0.676394
Target:  5'- ---aCGCGCGAGGAUGaaaCGGUCUCGa- -3'
miRNA:   3'- ccgcGCGCGCUCCUGC---GCCGGAGCca -5'
16103 3' -64.5 NC_004065.1 + 225380 0.66 0.676394
Target:  5'- cGCcCGCgGCGGGGGCGCuGGCgCUgaUGGUg -3'
miRNA:   3'- cCGcGCG-CGCUCCUGCG-CCG-GA--GCCA- -5'
16103 3' -64.5 NC_004065.1 + 128 0.66 0.676394
Target:  5'- uGGCuGCGCGCacgucaccGAGGGCGUGGCaC-CGu- -3'
miRNA:   3'- -CCG-CGCGCG--------CUCCUGCGCCG-GaGCca -5'
16103 3' -64.5 NC_004065.1 + 164602 0.66 0.675466
Target:  5'- cGGC-CGCcgcucgcagGCGGGGAagaggcuCGCaGCCUCGGa -3'
miRNA:   3'- -CCGcGCG---------CGCUCCU-------GCGcCGGAGCCa -5'
16103 3' -64.5 NC_004065.1 + 25529 0.66 0.673611
Target:  5'- uGCGCGCGCacgacaaagcgacaGAcGGCGuCGGCgUCGGc -3'
miRNA:   3'- cCGCGCGCG--------------CUcCUGC-GCCGgAGCCa -5'
16103 3' -64.5 NC_004065.1 + 137408 0.66 0.667108
Target:  5'- aGGUGgGCGUaccuaguuuaGGGGGCGUGGUUcCGGg -3'
miRNA:   3'- -CCGCgCGCG----------CUCCUGCGCCGGaGCCa -5'
16103 3' -64.5 NC_004065.1 + 38555 0.66 0.667108
Target:  5'- -aCGCGUGCGuGGugGUGccgcaCCUCGGc -3'
miRNA:   3'- ccGCGCGCGCuCCugCGCc----GGAGCCa -5'
16103 3' -64.5 NC_004065.1 + 33247 0.66 0.667108
Target:  5'- uGGUGUucGuCGCuGAGGugGCGGaUCUUGGg -3'
miRNA:   3'- -CCGCG--C-GCG-CUCCugCGCC-GGAGCCa -5'
16103 3' -64.5 NC_004065.1 + 48104 0.66 0.667108
Target:  5'- uGGCG-GCG-GcGGugGCGGCggCGGUg -3'
miRNA:   3'- -CCGCgCGCgCuCCugCGCCGgaGCCA- -5'
16103 3' -64.5 NC_004065.1 + 108803 0.66 0.666178
Target:  5'- uGGCGUGgcggccguucagcCGCGgcaacAGGcUGaCGGCCUCGGUg -3'
miRNA:   3'- -CCGCGC-------------GCGC-----UCCuGC-GCCGGAGCCA- -5'
16103 3' -64.5 NC_004065.1 + 162259 0.66 0.664318
Target:  5'- gGGCGCccGCGCcGuucgucacgccgucGGACGCGGCgccgCUCGGc -3'
miRNA:   3'- -CCGCG--CGCGcU--------------CCUGCGCCG----GAGCCa -5'
16103 3' -64.5 NC_004065.1 + 130858 0.66 0.657799
Target:  5'- aGGUGCaGCaGCagcuGGAgGCGGCCaCGGUg -3'
miRNA:   3'- -CCGCG-CG-CGcu--CCUgCGCCGGaGCCA- -5'
16103 3' -64.5 NC_004065.1 + 79291 0.66 0.657799
Target:  5'- aGCGUGgGCGAGcuguCGaCGGCCUgGGc -3'
miRNA:   3'- cCGCGCgCGCUCcu--GC-GCCGGAgCCa -5'
16103 3' -64.5 NC_004065.1 + 103418 0.66 0.657799
Target:  5'- cGGC-CGaCGCGAuGGAgCGCGGCCUg--- -3'
miRNA:   3'- -CCGcGC-GCGCU-CCU-GCGCCGGAgcca -5'
16103 3' -64.5 NC_004065.1 + 88475 0.66 0.657799
Target:  5'- uGCGCGCGaCGccgaAGaGCGCGuCCUCGGa -3'
miRNA:   3'- cCGCGCGC-GC----UCcUGCGCcGGAGCCa -5'
16103 3' -64.5 NC_004065.1 + 77655 0.66 0.648473
Target:  5'- aGGCGCugaagGCGCucaaGACGCGGCagUCGGa -3'
miRNA:   3'- -CCGCG-----CGCGcuc-CUGCGCCGg-AGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.