miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16103 5' -57.1 NC_004065.1 + 174369 0.66 0.940358
Target:  5'- aGACCGGcca-GUGCCGaCUCgAgCCCg -3'
miRNA:   3'- aCUGGUCuuuaCACGGC-GGGgUgGGG- -5'
16103 5' -57.1 NC_004065.1 + 164701 0.66 0.940358
Target:  5'- -cACCAGAaagguGAUGUgguccGCCGCCUCGCUg- -3'
miRNA:   3'- acUGGUCU-----UUACA-----CGGCGGGGUGGgg -5'
16103 5' -57.1 NC_004065.1 + 207977 0.66 0.940358
Target:  5'- cGACCGGAGGgauaCCGCggCCugCCCg -3'
miRNA:   3'- aCUGGUCUUUacacGGCGg-GGugGGG- -5'
16103 5' -57.1 NC_004065.1 + 200696 0.66 0.940358
Target:  5'- gUGACaugAGAGAUGacaUGUCGUCacaggggaaaaCCGCCCCg -3'
miRNA:   3'- -ACUGg--UCUUUAC---ACGGCGG-----------GGUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 108723 0.66 0.940358
Target:  5'- -cGCCAGAAggGgGCgCGCgUCGCCCUc -3'
miRNA:   3'- acUGGUCUUuaCaCG-GCGgGGUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 207214 0.66 0.940358
Target:  5'- cGAgCGGAAAUGU-CCaa-CCACCCCc -3'
miRNA:   3'- aCUgGUCUUUACAcGGcggGGUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 154350 0.66 0.938531
Target:  5'- cGGCCAaGAAucagcccgcgGCCGCCUCGCCgaCCu -3'
miRNA:   3'- aCUGGU-CUUuaca------CGGCGGGGUGG--GG- -5'
16103 5' -57.1 NC_004065.1 + 147218 0.66 0.935724
Target:  5'- cGAgCAGAAGUa--CUuCCCCACCCCc -3'
miRNA:   3'- aCUgGUCUUUAcacGGcGGGGUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 129250 0.66 0.935724
Target:  5'- cGACCGcgcGAAGcUGaGcCCGCCCCACagcuaCCg -3'
miRNA:   3'- aCUGGU---CUUU-ACaC-GGCGGGGUGg----GG- -5'
16103 5' -57.1 NC_004065.1 + 75859 0.66 0.935724
Target:  5'- -aGCCAGcaaca-GCCGCCgCCGCCgCCg -3'
miRNA:   3'- acUGGUCuuuacaCGGCGG-GGUGG-GG- -5'
16103 5' -57.1 NC_004065.1 + 128386 0.66 0.935248
Target:  5'- aGAcCCAGAg--GUGCCcggauucgacccgGgUCCGCCCCg -3'
miRNA:   3'- aCU-GGUCUuuaCACGG-------------CgGGGUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 66678 0.66 0.930868
Target:  5'- cGACCAGGAugacuUGcagcaaGCUGCCguCCGCCaCCa -3'
miRNA:   3'- aCUGGUCUUu----ACa-----CGGCGG--GGUGG-GG- -5'
16103 5' -57.1 NC_004065.1 + 128802 0.66 0.93037
Target:  5'- aGACCAcccgcgauuacacGAAAUGUuucaccGCCGaCCCCGgCCg -3'
miRNA:   3'- aCUGGU-------------CUUUACA------CGGC-GGGGUgGGg -5'
16103 5' -57.1 NC_004065.1 + 97323 0.66 0.93037
Target:  5'- -aACCA-------GCCGCCCCgACCCCg -3'
miRNA:   3'- acUGGUcuuuacaCGGCGGGG-UGGGG- -5'
16103 5' -57.1 NC_004065.1 + 122234 0.66 0.925788
Target:  5'- gGGCCGGcgGgucguuccUGUcGCCGCUgCugCCCg -3'
miRNA:   3'- aCUGGUCuuU--------ACA-CGGCGGgGugGGG- -5'
16103 5' -57.1 NC_004065.1 + 227568 0.66 0.925788
Target:  5'- gGACCGGGAagaAUGaaauaUGCCGUCUuaaUACCCUu -3'
miRNA:   3'- aCUGGUCUU---UAC-----ACGGCGGG---GUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 65218 0.66 0.920485
Target:  5'- cGGCCAGAGugccggcgGUGgCGCCCguCUCg -3'
miRNA:   3'- aCUGGUCUUua------CACgGCGGGguGGGg -5'
16103 5' -57.1 NC_004065.1 + 206396 0.66 0.920485
Target:  5'- cGGCCcGAGGccaGCCGCCcguCCACCCg -3'
miRNA:   3'- aCUGGuCUUUacaCGGCGG---GGUGGGg -5'
16103 5' -57.1 NC_004065.1 + 138567 0.66 0.920485
Target:  5'- cUGACgGcGAcgGUGCCG-UCCGCUCCg -3'
miRNA:   3'- -ACUGgUcUUuaCACGGCgGGGUGGGG- -5'
16103 5' -57.1 NC_004065.1 + 31331 0.66 0.920485
Target:  5'- -aGCCAGG-----GCCGCCUuaaaCACCCCg -3'
miRNA:   3'- acUGGUCUuuacaCGGCGGG----GUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.