miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 3' -56.8 NC_004065.1 + 43696 0.66 0.956545
Target:  5'- aCCGUugcACAUGGGguauuccuuGCGCAGCUuCUCCGc -3'
miRNA:   3'- -GGCGc--UGUGCUU---------CGCGUCGA-GAGGCu -5'
16105 3' -56.8 NC_004065.1 + 18303 0.66 0.956545
Target:  5'- -aGCGGCugGAcGGUccgucuuCGGUUCUCCGAg -3'
miRNA:   3'- ggCGCUGugCU-UCGc------GUCGAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 169547 0.66 0.956545
Target:  5'- aCUGCGucCugGAgGGCGCGGCagucgagagCUCCGu -3'
miRNA:   3'- -GGCGCu-GugCU-UCGCGUCGa--------GAGGCu -5'
16105 3' -56.8 NC_004065.1 + 142593 0.66 0.956545
Target:  5'- uUCGCcACagcaGCGAAGCGguGCgCUUCGGc -3'
miRNA:   3'- -GGCGcUG----UGCUUCGCguCGaGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 72472 0.66 0.956545
Target:  5'- -aGCGAgACGGugucGGCGCGGCUgaagaCCGGg -3'
miRNA:   3'- ggCGCUgUGCU----UCGCGUCGAga---GGCU- -5'
16105 3' -56.8 NC_004065.1 + 117488 0.66 0.956545
Target:  5'- aCCgGUGuuuCAUGAA-CGCAGCagUCUCCGGa -3'
miRNA:   3'- -GG-CGCu--GUGCUUcGCGUCG--AGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 60577 0.66 0.956545
Target:  5'- uCCGC-ACACGGcggGGCGCccgauGUUCUCgGGg -3'
miRNA:   3'- -GGCGcUGUGCU---UCGCGu----CGAGAGgCU- -5'
16105 3' -56.8 NC_004065.1 + 99665 0.66 0.956545
Target:  5'- gCCgGCGGCGCGgcGcCGaCAGCg-UCCGGu -3'
miRNA:   3'- -GG-CGCUGUGCuuC-GC-GUCGagAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 35785 0.66 0.956545
Target:  5'- -aGCGAgGCGAAGagGCAGCUgaCCc- -3'
miRNA:   3'- ggCGCUgUGCUUCg-CGUCGAgaGGcu -5'
16105 3' -56.8 NC_004065.1 + 199222 0.66 0.952806
Target:  5'- aCCGCGACggugACGAcaGGUGCAuuGUUCUCg-- -3'
miRNA:   3'- -GGCGCUG----UGCU--UCGCGU--CGAGAGgcu -5'
16105 3' -56.8 NC_004065.1 + 169322 0.66 0.952806
Target:  5'- -aGCGugACG-GGCGCAGCg--CCa- -3'
miRNA:   3'- ggCGCugUGCuUCGCGUCGagaGGcu -5'
16105 3' -56.8 NC_004065.1 + 76063 0.66 0.952806
Target:  5'- aCCGCGACgGCGcagacAAGuCGCAGg-CUCCGc -3'
miRNA:   3'- -GGCGCUG-UGC-----UUC-GCGUCgaGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 64881 0.66 0.952806
Target:  5'- aCCGCGGCGCGcgucgGAGaagaGCGGCgccagucgCCGGg -3'
miRNA:   3'- -GGCGCUGUGC-----UUCg---CGUCGaga-----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 125650 0.66 0.952806
Target:  5'- gCCGCGugGCGu-GUGCcauguGCUCcCUGAc -3'
miRNA:   3'- -GGCGCugUGCuuCGCGu----CGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 151363 0.66 0.952806
Target:  5'- gCCGCGGCGcCGGccgcuGCGCuGGCgg-CCGAu -3'
miRNA:   3'- -GGCGCUGU-GCUu----CGCG-UCGagaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 107600 0.66 0.950858
Target:  5'- aUCGaCGACACGGugcugaucgacauGCGCAacgucugcaucucGCUCUCCa- -3'
miRNA:   3'- -GGC-GCUGUGCUu------------CGCGU-------------CGAGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 207507 0.66 0.948857
Target:  5'- cUCGCGGCGCGAuAGCGgucguCGGUcCUCCu- -3'
miRNA:   3'- -GGCGCUGUGCU-UCGC-----GUCGaGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 165124 0.66 0.948857
Target:  5'- cCCGCccgGCGAcuGGCGCcGCucuUCUCCGAc -3'
miRNA:   3'- -GGCGcugUGCU--UCGCGuCG---AGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 94971 0.66 0.948857
Target:  5'- uCCGCGGC-UGccGCGUAcGCcugaccUCUCCGAa -3'
miRNA:   3'- -GGCGCUGuGCuuCGCGU-CG------AGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 202223 0.66 0.948857
Target:  5'- aCC-CGACACaGAgcuuGGUGCcGCUCUCCc- -3'
miRNA:   3'- -GGcGCUGUG-CU----UCGCGuCGAGAGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.