miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 3' -56.8 NC_004065.1 + 125650 0.66 0.952806
Target:  5'- gCCGCGugGCGu-GUGCcauguGCUCcCUGAc -3'
miRNA:   3'- -GGCGCugUGCuuCGCGu----CGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 143450 0.66 0.944694
Target:  5'- aCUGCGA--CGAGGUGCcGCUCUgCGu -3'
miRNA:   3'- -GGCGCUguGCUUCGCGuCGAGAgGCu -5'
16105 3' -56.8 NC_004065.1 + 97642 0.66 0.944694
Target:  5'- uUGCGGCACGGAGaCGcCGGUUUguUCgCGAu -3'
miRNA:   3'- gGCGCUGUGCUUC-GC-GUCGAG--AG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 64881 0.66 0.952806
Target:  5'- aCCGCGGCGCGcgucgGAGaagaGCGGCgccagucgCCGGg -3'
miRNA:   3'- -GGCGCUGUGC-----UUCg---CGUCGaga-----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 199457 0.66 0.935719
Target:  5'- gCUGgGACGCGAAGuCGCGGaCgaugCggcagCCGAa -3'
miRNA:   3'- -GGCgCUGUGCUUC-GCGUC-Ga---Ga----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 163303 0.66 0.940316
Target:  5'- uCCGaCGGCACG-GGCGCcAGC-CUCuUGAc -3'
miRNA:   3'- -GGC-GCUGUGCuUCGCG-UCGaGAG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 70616 0.66 0.948857
Target:  5'- gCGCuacCugGcuAAGCGCAGCUCUCagGAc -3'
miRNA:   3'- gGCGcu-GugC--UUCGCGUCGAGAGg-CU- -5'
16105 3' -56.8 NC_004065.1 + 117488 0.66 0.956545
Target:  5'- aCCgGUGuuuCAUGAA-CGCAGCagUCUCCGGa -3'
miRNA:   3'- -GG-CGCu--GUGCUUcGCGUCG--AGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 72472 0.66 0.956545
Target:  5'- -aGCGAgACGGugucGGCGCGGCUgaagaCCGGg -3'
miRNA:   3'- ggCGCUgUGCU----UCGCGUCGAga---GGCU- -5'
16105 3' -56.8 NC_004065.1 + 109051 0.66 0.944694
Target:  5'- uCCGCGGCAgGAucgaucaggcGGaacaGCuGCUgUCCGGg -3'
miRNA:   3'- -GGCGCUGUgCU----------UCg---CGuCGAgAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 83594 0.66 0.944694
Target:  5'- -gGCuGaACACGuucgaggcGCGCAGCUCUCCc- -3'
miRNA:   3'- ggCG-C-UGUGCuu------CGCGUCGAGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 198120 0.66 0.940316
Target:  5'- uCgGCGACGCGccGCGUcaGGCccgCUCuCGAg -3'
miRNA:   3'- -GgCGCUGUGCuuCGCG--UCGa--GAG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 99665 0.66 0.956545
Target:  5'- gCCgGCGGCGCGgcGcCGaCAGCg-UCCGGu -3'
miRNA:   3'- -GG-CGCUGUGCuuC-GC-GUCGagAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 83770 0.66 0.935719
Target:  5'- gCGCGgaaaGCAC-AGGCGCAGCUUcuugCCGc -3'
miRNA:   3'- gGCGC----UGUGcUUCGCGUCGAGa---GGCu -5'
16105 3' -56.8 NC_004065.1 + 60577 0.66 0.956545
Target:  5'- uCCGC-ACACGGcggGGCGCccgauGUUCUCgGGg -3'
miRNA:   3'- -GGCGcUGUGCU---UCGCGu----CGAGAGgCU- -5'
16105 3' -56.8 NC_004065.1 + 171333 0.66 0.935719
Target:  5'- aCGUGACAccCGGAGCGaCGGCgCUgUGAc -3'
miRNA:   3'- gGCGCUGU--GCUUCGC-GUCGaGAgGCU- -5'
16105 3' -56.8 NC_004065.1 + 161636 0.66 0.935719
Target:  5'- gCUGCGcCACGAA-CGCGGCgaUCUUCGc -3'
miRNA:   3'- -GGCGCuGUGCUUcGCGUCG--AGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 142593 0.66 0.956545
Target:  5'- uUCGCcACagcaGCGAAGCGguGCgCUUCGGc -3'
miRNA:   3'- -GGCGcUG----UGCUUCGCguCGaGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 99516 0.66 0.935719
Target:  5'- gCGCG-CACGAGgaggacGCGCGGCucgaugagcaUCUCCa- -3'
miRNA:   3'- gGCGCuGUGCUU------CGCGUCG----------AGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 207507 0.66 0.948857
Target:  5'- cUCGCGGCGCGAuAGCGgucguCGGUcCUCCu- -3'
miRNA:   3'- -GGCGCUGUGCU-UCGC-----GUCGaGAGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.