miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 3' -56.8 NC_004065.1 + 118862 1.11 0.003302
Target:  5'- aCCGCGACACGAAGCGCAGCUCUCCGAu -3'
miRNA:   3'- -GGCGCUGUGCUUCGCGUCGAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 46725 0.79 0.316355
Target:  5'- uCCGCGaggucgcGCACGAGGCGCAcgcgcuGCUCUCCu- -3'
miRNA:   3'- -GGCGC-------UGUGCUUCGCGU------CGAGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 188903 0.78 0.384173
Target:  5'- aCGCGGCAgGu-GCGCGGgUCUCCGGg -3'
miRNA:   3'- gGCGCUGUgCuuCGCGUCgAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 28399 0.76 0.477997
Target:  5'- aCCGgGGuguucCACGggGCGCAGCUC-CUGGu -3'
miRNA:   3'- -GGCgCU-----GUGCuuCGCGUCGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 54567 0.75 0.513902
Target:  5'- aCGCGGCGCGGAGacugcuguugucuCGC-GCUCUCCGc -3'
miRNA:   3'- gGCGCUGUGCUUC-------------GCGuCGAGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 101876 0.75 0.533688
Target:  5'- gCCGCaGACgACGAcgccGGgGCGGCUcCUCCGAg -3'
miRNA:   3'- -GGCG-CUG-UGCU----UCgCGUCGA-GAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 116010 0.74 0.562401
Target:  5'- gUGCGcCGCGggG-GCAGCUCUCUGc -3'
miRNA:   3'- gGCGCuGUGCuuCgCGUCGAGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 84275 0.74 0.572068
Target:  5'- gCGCGACGCGAucGGCGCAcucaucaccGCUC-CCGc -3'
miRNA:   3'- gGCGCUGUGCU--UCGCGU---------CGAGaGGCu -5'
16105 3' -56.8 NC_004065.1 + 74665 0.74 0.581775
Target:  5'- aCCGCGGCGCGuccgccguAGCGCAGgg-UCCGAu -3'
miRNA:   3'- -GGCGCUGUGCu-------UCGCGUCgagAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 195089 0.74 0.601281
Target:  5'- gCGCGGCGCagacccccaGggGCGuCAGCUCgCCGGc -3'
miRNA:   3'- gGCGCUGUG---------CuuCGC-GUCGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 78680 0.74 0.602259
Target:  5'- gCCGCGGCGCccgaGAGCGaguaucugaacgugaAGCUCUCUGAg -3'
miRNA:   3'- -GGCGCUGUGc---UUCGCg--------------UCGAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 188829 0.73 0.611068
Target:  5'- gUCGCGGCACcgaccuuuccagGGAGaCGCAGCUCUacaaCGAg -3'
miRNA:   3'- -GGCGCUGUG------------CUUC-GCGUCGAGAg---GCU- -5'
16105 3' -56.8 NC_004065.1 + 143266 0.73 0.611068
Target:  5'- cCCGCGGCG-GggGCgGCAGCUUcaagggCCGAg -3'
miRNA:   3'- -GGCGCUGUgCuuCG-CGUCGAGa-----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 117417 0.73 0.620871
Target:  5'- cUCGCGGCGCGGAGUGgCAGCcgaUCgCGAg -3'
miRNA:   3'- -GGCGCUGUGCUUCGC-GUCGag-AG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 105567 0.72 0.66986
Target:  5'- -aGCGGCACGgcGCGCcgucGGCgggCUUCGAg -3'
miRNA:   3'- ggCGCUGUGCuuCGCG----UCGa--GAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 229538 0.72 0.679603
Target:  5'- uCCGCgGACGCGgcGCGCGGCcCggaggCUGAc -3'
miRNA:   3'- -GGCG-CUGUGCuuCGCGUCGaGa----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 112916 0.72 0.68931
Target:  5'- gUGCGACACcaGGGCGCGGCacgCUCgCGAa -3'
miRNA:   3'- gGCGCUGUGc-UUCGCGUCGa--GAG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 31540 0.72 0.698009
Target:  5'- aCCcCGGCAUGGAGCugcugguGguGUUCUCCGAc -3'
miRNA:   3'- -GGcGCUGUGCUUCG-------CguCGAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 172083 0.72 0.698009
Target:  5'- gCCGCGGuucgaGCGGgggacguAGCGCGGCUcCUCCGc -3'
miRNA:   3'- -GGCGCUg----UGCU-------UCGCGUCGA-GAGGCu -5'
16105 3' -56.8 NC_004065.1 + 57534 0.72 0.698974
Target:  5'- aCCGUccGGUGCGAGGUGCccgAGCUCUCUGAg -3'
miRNA:   3'- -GGCG--CUGUGCUUCGCG---UCGAGAGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.