miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 3' -56.8 NC_004065.1 + 70616 0.66 0.948857
Target:  5'- gCGCuacCugGcuAAGCGCAGCUCUCagGAc -3'
miRNA:   3'- gGCGcu-GugC--UUCGCGUCGAGAGg-CU- -5'
16105 3' -56.8 NC_004065.1 + 131487 0.66 0.944694
Target:  5'- gCCGCGACGgGcGGCGU--CUC-CCGAc -3'
miRNA:   3'- -GGCGCUGUgCuUCGCGucGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 109051 0.66 0.944694
Target:  5'- uCCGCGGCAgGAucgaucaggcGGaacaGCuGCUgUCCGGg -3'
miRNA:   3'- -GGCGCUGUgCU----------UCg---CGuCGAgAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 143450 0.66 0.944694
Target:  5'- aCUGCGA--CGAGGUGCcGCUCUgCGu -3'
miRNA:   3'- -GGCGCUguGCUUCGCGuCGAGAgGCu -5'
16105 3' -56.8 NC_004065.1 + 97642 0.66 0.944694
Target:  5'- uUGCGGCACGGAGaCGcCGGUUUguUCgCGAu -3'
miRNA:   3'- gGCGCUGUGCUUC-GC-GUCGAG--AG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 225496 0.66 0.944694
Target:  5'- aUGCGcCAUGAAGCGUuugcguagacGUUCUCCGc -3'
miRNA:   3'- gGCGCuGUGCUUCGCGu---------CGAGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 83594 0.66 0.944694
Target:  5'- -gGCuGaACACGuucgaggcGCGCAGCUCUCCc- -3'
miRNA:   3'- ggCG-C-UGUGCuu------CGCGUCGAGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 88478 0.66 0.940316
Target:  5'- gCGCGACGcCGAagAGCGCGuccucggagguGCUC-CUGAc -3'
miRNA:   3'- gGCGCUGU-GCU--UCGCGU-----------CGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 162166 0.66 0.940316
Target:  5'- gCCGcCGGC-UGcGGCGCAGCgUCUUCGc -3'
miRNA:   3'- -GGC-GCUGuGCuUCGCGUCG-AGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 198120 0.66 0.940316
Target:  5'- uCgGCGACGCGccGCGUcaGGCccgCUCuCGAg -3'
miRNA:   3'- -GgCGCUGUGCuuCGCG--UCGa--GAG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 163303 0.66 0.940316
Target:  5'- uCCGaCGGCACG-GGCGCcAGC-CUCuUGAc -3'
miRNA:   3'- -GGC-GCUGUGCuUCGCG-UCGaGAG-GCU- -5'
16105 3' -56.8 NC_004065.1 + 161636 0.66 0.935719
Target:  5'- gCUGCGcCACGAA-CGCGGCgaUCUUCGc -3'
miRNA:   3'- -GGCGCuGUGCUUcGCGUCG--AGAGGCu -5'
16105 3' -56.8 NC_004065.1 + 67092 0.66 0.935719
Target:  5'- uCCGCGu--CGAucuGGCGCGGCcauggUCCGAa -3'
miRNA:   3'- -GGCGCuguGCU---UCGCGUCGag---AGGCU- -5'
16105 3' -56.8 NC_004065.1 + 129711 0.66 0.935719
Target:  5'- aCGCGguguggcuGCGCGAAGacauCGCGGCUCgUgCGAg -3'
miRNA:   3'- gGCGC--------UGUGCUUC----GCGUCGAG-AgGCU- -5'
16105 3' -56.8 NC_004065.1 + 83770 0.66 0.935719
Target:  5'- gCGCGgaaaGCAC-AGGCGCAGCUUcuugCCGc -3'
miRNA:   3'- gGCGC----UGUGcUUCGCGUCGAGa---GGCu -5'
16105 3' -56.8 NC_004065.1 + 99516 0.66 0.935719
Target:  5'- gCGCG-CACGAGgaggacGCGCGGCucgaugagcaUCUCCa- -3'
miRNA:   3'- gGCGCuGUGCUU------CGCGUCG----------AGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 199457 0.66 0.935719
Target:  5'- gCUGgGACGCGAAGuCGCGGaCgaugCggcagCCGAa -3'
miRNA:   3'- -GGCgCUGUGCUUC-GCGUC-Ga---Ga----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 171333 0.66 0.935719
Target:  5'- aCGUGACAccCGGAGCGaCGGCgCUgUGAc -3'
miRNA:   3'- gGCGCUGU--GCUUCGC-GUCGaGAgGCU- -5'
16105 3' -56.8 NC_004065.1 + 107275 0.67 0.930905
Target:  5'- gCGCGugAUGAGGcCGCAcuGCUugcCUCUGGc -3'
miRNA:   3'- gGCGCugUGCUUC-GCGU--CGA---GAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 55419 0.67 0.930905
Target:  5'- cCUGaugGGCugucCGggGCGCGGgUCUUCGAg -3'
miRNA:   3'- -GGCg--CUGu---GCuuCGCGUCgAGAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.