miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 3' -56.8 NC_004065.1 + 6246 0.67 0.915142
Target:  5'- -aGCGAUACGGcaaGCAGCUCgcggCCGu -3'
miRNA:   3'- ggCGCUGUGCUucgCGUCGAGa---GGCu -5'
16105 3' -56.8 NC_004065.1 + 6631 0.69 0.863687
Target:  5'- uCCGCGGCuguCGGAgggggagacGCGCAGCuaccgUCUCCc- -3'
miRNA:   3'- -GGCGCUGu--GCUU---------CGCGUCG-----AGAGGcu -5'
16105 3' -56.8 NC_004065.1 + 16536 0.7 0.782656
Target:  5'- uUCGUGGCGuCGAcGGuCGCGGCgaccgCUCCGAc -3'
miRNA:   3'- -GGCGCUGU-GCU-UC-GCGUCGa----GAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 18257 0.71 0.75559
Target:  5'- uCC-CGACugGAGGCGUcGCUCggaguagcgCCGAu -3'
miRNA:   3'- -GGcGCUGugCUUCGCGuCGAGa--------GGCU- -5'
16105 3' -56.8 NC_004065.1 + 18303 0.66 0.956545
Target:  5'- -aGCGGCugGAcGGUccgucuuCGGUUCUCCGAg -3'
miRNA:   3'- ggCGCUGugCU-UCGc------GUCGAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 22041 0.71 0.746357
Target:  5'- aCGCGuuugaagauCAUGAAGCugGCGGCUC-CCGAg -3'
miRNA:   3'- gGCGCu--------GUGCUUCG--CGUCGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 22489 0.69 0.863687
Target:  5'- gCGaCGACGCGGAGCGCgcGGCgaggaggaCCGAc -3'
miRNA:   3'- gGC-GCUGUGCUUCGCG--UCGaga-----GGCU- -5'
16105 3' -56.8 NC_004065.1 + 22563 0.67 0.930905
Target:  5'- aCGCGGCACaGAcagaucAGCGCAcGCuaugUCUUCGGc -3'
miRNA:   3'- gGCGCUGUG-CU------UCGCGU-CG----AGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 26415 0.67 0.903542
Target:  5'- uCCGC--CACGGcGGCgGCGGC-CUCCGAg -3'
miRNA:   3'- -GGCGcuGUGCU-UCG-CGUCGaGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 28399 0.76 0.477997
Target:  5'- aCCGgGGuguucCACGggGCGCAGCUC-CUGGu -3'
miRNA:   3'- -GGCgCU-----GUGCuuCGCGUCGAGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 28652 0.71 0.727623
Target:  5'- aCGUGGCaccccccgGCGAGGCGCAGCUCg-CGc -3'
miRNA:   3'- gGCGCUG--------UGCUUCGCGUCGAGagGCu -5'
16105 3' -56.8 NC_004065.1 + 30080 0.68 0.870835
Target:  5'- aCCGcCGugGCGGAGCGC-GCg--CUGAu -3'
miRNA:   3'- -GGC-GCugUGCUUCGCGuCGagaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 30471 0.71 0.75559
Target:  5'- aCCGCGGCACGAuggGGCGCgcccggcuggaGGCgC-CCGGc -3'
miRNA:   3'- -GGCGCUGUGCU---UCGCG-----------UCGaGaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 31540 0.72 0.698009
Target:  5'- aCCcCGGCAUGGAGCugcugguGguGUUCUCCGAc -3'
miRNA:   3'- -GGcGCUGUGCUUCG-------CguCGAGAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 31914 0.69 0.856347
Target:  5'- aCGCGGCGCGucGcCGaCAGCgugCCGAa -3'
miRNA:   3'- gGCGCUGUGCuuC-GC-GUCGagaGGCU- -5'
16105 3' -56.8 NC_004065.1 + 32671 0.69 0.84882
Target:  5'- cUCGCGGgCGCGGuucucGCGCAGCgcCUUCGGg -3'
miRNA:   3'- -GGCGCU-GUGCUu----CGCGUCGa-GAGGCU- -5'
16105 3' -56.8 NC_004065.1 + 33724 0.68 0.870835
Target:  5'- aCCGCaAguCGGAGCGCAGCgaggUCGAu -3'
miRNA:   3'- -GGCGcUguGCUUCGCGUCGaga-GGCU- -5'
16105 3' -56.8 NC_004065.1 + 34605 0.67 0.90945
Target:  5'- aCgGCGACGCGGcgggAGCGUacguguacGGCUCgCCGu -3'
miRNA:   3'- -GgCGCUGUGCU----UCGCG--------UCGAGaGGCu -5'
16105 3' -56.8 NC_004065.1 + 35785 0.66 0.956545
Target:  5'- -aGCGAgGCGAAGagGCAGCUgaCCc- -3'
miRNA:   3'- ggCGCUgUGCUUCg-CGUCGAgaGGcu -5'
16105 3' -56.8 NC_004065.1 + 37503 0.68 0.883871
Target:  5'- uCCGaCGACuccaucucgaucaACGGcuCGCGGCUgUCCGAg -3'
miRNA:   3'- -GGC-GCUG-------------UGCUucGCGUCGAgAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.