miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 5' -53.7 NC_004065.1 + 143 0.66 0.988901
Target:  5'- cACCGAGGgCguggcaCCGUG-CCaagaagaugUUCGUGCCa -3'
miRNA:   3'- -UGGCUCUgGa-----GGUACaGG---------AAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 28558 0.66 0.988901
Target:  5'- gACCGGGAUCUCgCGgggagcGUCCggcUCGaGCCc -3'
miRNA:   3'- -UGGCUCUGGAG-GUa-----CAGGa--AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 143350 0.66 0.987461
Target:  5'- cCCGAcGAacuacCCUCCGUGUaCCUggUCucgGCCa -3'
miRNA:   3'- uGGCU-CU-----GGAGGUACA-GGA--AGua-CGG- -5'
16105 5' -53.7 NC_004065.1 + 35422 0.66 0.987461
Target:  5'- uACCGGGACgacggcuucguCUUCgagGUGUCCaccgUCGUGCUg -3'
miRNA:   3'- -UGGCUCUG-----------GAGG---UACAGGa---AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 87592 0.66 0.985881
Target:  5'- cACagGAGACgCUCCAcGUCgUUCAgcgucGCCa -3'
miRNA:   3'- -UGg-CUCUG-GAGGUaCAGgAAGUa----CGG- -5'
16105 5' -53.7 NC_004065.1 + 121200 0.66 0.982269
Target:  5'- cACCGAGGCCgUCAg--CCUgu-UGCCg -3'
miRNA:   3'- -UGGCUCUGGaGGUacaGGAaguACGG- -5'
16105 5' -53.7 NC_004065.1 + 136488 0.66 0.982269
Target:  5'- aGCCGAGGCCgguagCCGgggagcugGUCCgggaaGCCa -3'
miRNA:   3'- -UGGCUCUGGa----GGUa-------CAGGaaguaCGG- -5'
16105 5' -53.7 NC_004065.1 + 100731 0.66 0.982269
Target:  5'- cAUCGugucGGCUUCCGUGUUCcagUCGUaGCCg -3'
miRNA:   3'- -UGGCu---CUGGAGGUACAGGa--AGUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 180953 0.67 0.980221
Target:  5'- cGCCGGuACCUCCuUG-CCggUCAgcugGCCg -3'
miRNA:   3'- -UGGCUcUGGAGGuACaGGa-AGUa---CGG- -5'
16105 5' -53.7 NC_004065.1 + 194520 0.67 0.978002
Target:  5'- uCCGucGCCUCCAaGacgCCggUCGUGCCc -3'
miRNA:   3'- uGGCucUGGAGGUaCa--GGa-AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 169570 0.67 0.977771
Target:  5'- gUCGAGAgCUCCGUcgacgugGUCCUcggucUCGguUGCCg -3'
miRNA:   3'- uGGCUCUgGAGGUA-------CAGGA-----AGU--ACGG- -5'
16105 5' -53.7 NC_004065.1 + 205917 0.67 0.975605
Target:  5'- cGCCGAGGCCgacgucggcgCCAUggacGUCCUcggcaucaucaUCGaGCCg -3'
miRNA:   3'- -UGGCUCUGGa---------GGUA----CAGGA-----------AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 76756 0.67 0.975605
Target:  5'- cGCCGGcGGCCUCguCAUcGUCCggcgCAUcGCCg -3'
miRNA:   3'- -UGGCU-CUGGAG--GUA-CAGGaa--GUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 108833 0.67 0.973022
Target:  5'- gGCUGAcGGCCUCgGUGagCCUggaCGUGUCg -3'
miRNA:   3'- -UGGCU-CUGGAGgUACa-GGAa--GUACGG- -5'
16105 5' -53.7 NC_004065.1 + 130945 0.67 0.973022
Target:  5'- cCCGAGACUUCuCGUGUCUagCGcGCg -3'
miRNA:   3'- uGGCUCUGGAG-GUACAGGaaGUaCGg -5'
16105 5' -53.7 NC_004065.1 + 204111 0.67 0.973022
Target:  5'- uCCGAGACCUCgAUGUUCguagagaccUCAacgGUCg -3'
miRNA:   3'- uGGCUCUGGAGgUACAGGa--------AGUa--CGG- -5'
16105 5' -53.7 NC_004065.1 + 178074 0.67 0.973022
Target:  5'- gACCucGucucuCCUCCAUGUCCcaCAcUGCCu -3'
miRNA:   3'- -UGGcuCu----GGAGGUACAGGaaGU-ACGG- -5'
16105 5' -53.7 NC_004065.1 + 183088 0.67 0.970246
Target:  5'- cCCGGGuccACCUCgAUGUCCaggUCGUcGUCg -3'
miRNA:   3'- uGGCUC---UGGAGgUACAGGa--AGUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 149322 0.67 0.970246
Target:  5'- gGCCGGGAUgCUcCCGUGUCUcccCAUcGCCg -3'
miRNA:   3'- -UGGCUCUG-GA-GGUACAGGaa-GUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 195568 0.68 0.964094
Target:  5'- aGCCGAGACCUgCGUGcCCacgcUCGggugacgGCUg -3'
miRNA:   3'- -UGGCUCUGGAgGUACaGGa---AGUa------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.