miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 5' -53.7 NC_004065.1 + 118899 1.13 0.004417
Target:  5'- cACCGAGACCUCCAUGUCCUUCAUGCCg -3'
miRNA:   3'- -UGGCUCUGGAGGUACAGGAAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 27884 0.78 0.491321
Target:  5'- gGCCGGGACCUCC--GUCCgaUCcUGCCg -3'
miRNA:   3'- -UGGCUCUGGAGGuaCAGGa-AGuACGG- -5'
16105 5' -53.7 NC_004065.1 + 174674 0.77 0.56323
Target:  5'- cGCCGGGACCucguucuccgucgggUCCGUGUCCgUUUccGCCg -3'
miRNA:   3'- -UGGCUCUGG---------------AGGUACAGG-AAGuaCGG- -5'
16105 5' -53.7 NC_004065.1 + 185028 0.73 0.767518
Target:  5'- uCCGAGAuCCUCCcaGUGUCCgagacUGCCa -3'
miRNA:   3'- uGGCUCU-GGAGG--UACAGGaagu-ACGG- -5'
16105 5' -53.7 NC_004065.1 + 44233 0.73 0.773088
Target:  5'- aACCGAGACCUCugCAUGaUCCUgguggggaugcuGUGCCa -3'
miRNA:   3'- -UGGCUCUGGAG--GUAC-AGGAag----------UACGG- -5'
16105 5' -53.7 NC_004065.1 + 103494 0.73 0.78591
Target:  5'- cGCUGGGACCguaacccgCCAUGUCCaUCAcGCa -3'
miRNA:   3'- -UGGCUCUGGa-------GGUACAGGaAGUaCGg -5'
16105 5' -53.7 NC_004065.1 + 199538 0.73 0.794909
Target:  5'- aGCCGGGcGCCUCCAgccgGgcgcgCCccaUCGUGCCg -3'
miRNA:   3'- -UGGCUC-UGGAGGUa---Ca----GGa--AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 109446 0.71 0.853438
Target:  5'- gGCCGAGACCggcgCCGgagGUCCcgcccgcUCGcGCCg -3'
miRNA:   3'- -UGGCUCUGGa---GGUa--CAGGa------AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 149989 0.71 0.853438
Target:  5'- cACCGAGuCCUCCA-GUCCgaucUUCGacuUGCUg -3'
miRNA:   3'- -UGGCUCuGGAGGUaCAGG----AAGU---ACGG- -5'
16105 5' -53.7 NC_004065.1 + 146007 0.71 0.868505
Target:  5'- gAUCGAGACCaguacggcgaUCCA-GUCCaUCAUcGCCg -3'
miRNA:   3'- -UGGCUCUGG----------AGGUaCAGGaAGUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 107420 0.71 0.875731
Target:  5'- gACUGGGACCUCgugcUGcCCUggaUCGUGCCc -3'
miRNA:   3'- -UGGCUCUGGAGgu--ACaGGA---AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 196274 0.7 0.889541
Target:  5'- cCCGAGGCCUCCGacUCCUgcaaggCGcuggGCCg -3'
miRNA:   3'- uGGCUCUGGAGGUacAGGAa-----GUa---CGG- -5'
16105 5' -53.7 NC_004065.1 + 37592 0.7 0.914485
Target:  5'- uGCCgGAGAUUUCCAUGcUCaggucgUCAUGCUg -3'
miRNA:   3'- -UGG-CUCUGGAGGUAC-AGga----AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 24095 0.7 0.914485
Target:  5'- uGCCGAgGACgUCCAUGgcgCCgacgUCG-GCCu -3'
miRNA:   3'- -UGGCU-CUGgAGGUACa--GGa---AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 155892 0.69 0.930772
Target:  5'- cCCGGGcacccGCCUCgAcGUCC-UCGUGCCc -3'
miRNA:   3'- uGGCUC-----UGGAGgUaCAGGaAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 15439 0.69 0.935735
Target:  5'- aACCgGAGAagUCCAUGuaucUCCUUCAUGUUc -3'
miRNA:   3'- -UGG-CUCUggAGGUAC----AGGAAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 196355 0.69 0.940466
Target:  5'- gAUCGcucGGCCUCCAUGUCCcgcuaUCuccGCCg -3'
miRNA:   3'- -UGGCu--CUGGAGGUACAGGa----AGua-CGG- -5'
16105 5' -53.7 NC_004065.1 + 121254 0.69 0.944966
Target:  5'- cGCCGccACCUCUagGUCCagCGUGCUc -3'
miRNA:   3'- -UGGCucUGGAGGuaCAGGaaGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 161461 0.69 0.944966
Target:  5'- cCUGAGAgCUCCGgg-CCUUCGggacGCCg -3'
miRNA:   3'- uGGCUCUgGAGGUacaGGAAGUa---CGG- -5'
16105 5' -53.7 NC_004065.1 + 117555 0.68 0.949237
Target:  5'- cCUGGGAUCUCC-UGUCCcgUCA-GCUg -3'
miRNA:   3'- uGGCUCUGGAGGuACAGGa-AGUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.