miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16105 5' -53.7 NC_004065.1 + 143 0.66 0.988901
Target:  5'- cACCGAGGgCguggcaCCGUG-CCaagaagaugUUCGUGCCa -3'
miRNA:   3'- -UGGCUCUgGa-----GGUACaGG---------AAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 15439 0.69 0.935735
Target:  5'- aACCgGAGAagUCCAUGuaucUCCUUCAUGUUc -3'
miRNA:   3'- -UGG-CUCUggAGGUAC----AGGAAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 24095 0.7 0.914485
Target:  5'- uGCCGAgGACgUCCAUGgcgCCgacgUCG-GCCu -3'
miRNA:   3'- -UGGCU-CUGgAGGUACa--GGa---AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 27884 0.78 0.491321
Target:  5'- gGCCGGGACCUCC--GUCCgaUCcUGCCg -3'
miRNA:   3'- -UGGCUCUGGAGGuaCAGGa-AGuACGG- -5'
16105 5' -53.7 NC_004065.1 + 28558 0.66 0.988901
Target:  5'- gACCGGGAUCUCgCGgggagcGUCCggcUCGaGCCc -3'
miRNA:   3'- -UGGCUCUGGAG-GUa-----CAGGa--AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 32023 0.68 0.949237
Target:  5'- uCCGAGGCCaUCgcgcaGUGUCCcgUCcUGCCc -3'
miRNA:   3'- uGGCUCUGG-AGg----UACAGGa-AGuACGG- -5'
16105 5' -53.7 NC_004065.1 + 35422 0.66 0.987461
Target:  5'- uACCGGGACgacggcuucguCUUCgagGUGUCCaccgUCGUGCUg -3'
miRNA:   3'- -UGGCUCUG-----------GAGG---UACAGGa---AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 37592 0.7 0.914485
Target:  5'- uGCCgGAGAUUUCCAUGcUCaggucgUCAUGCUg -3'
miRNA:   3'- -UGG-CUCUGGAGGUAC-AGga----AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 44233 0.73 0.773088
Target:  5'- aACCGAGACCUCugCAUGaUCCUgguggggaugcuGUGCCa -3'
miRNA:   3'- -UGGCUCUGGAG--GUAC-AGGAag----------UACGG- -5'
16105 5' -53.7 NC_004065.1 + 76756 0.67 0.975605
Target:  5'- cGCCGGcGGCCUCguCAUcGUCCggcgCAUcGCCg -3'
miRNA:   3'- -UGGCU-CUGGAG--GUA-CAGGaa--GUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 87592 0.66 0.985881
Target:  5'- cACagGAGACgCUCCAcGUCgUUCAgcgucGCCa -3'
miRNA:   3'- -UGg-CUCUG-GAGGUaCAGgAAGUa----CGG- -5'
16105 5' -53.7 NC_004065.1 + 100731 0.66 0.982269
Target:  5'- cAUCGugucGGCUUCCGUGUUCcagUCGUaGCCg -3'
miRNA:   3'- -UGGCu---CUGGAGGUACAGGa--AGUA-CGG- -5'
16105 5' -53.7 NC_004065.1 + 103494 0.73 0.78591
Target:  5'- cGCUGGGACCguaacccgCCAUGUCCaUCAcGCa -3'
miRNA:   3'- -UGGCUCUGGa-------GGUACAGGaAGUaCGg -5'
16105 5' -53.7 NC_004065.1 + 107420 0.71 0.875731
Target:  5'- gACUGGGACCUCgugcUGcCCUggaUCGUGCCc -3'
miRNA:   3'- -UGGCUCUGGAGgu--ACaGGA---AGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 108833 0.67 0.973022
Target:  5'- gGCUGAcGGCCUCgGUGagCCUggaCGUGUCg -3'
miRNA:   3'- -UGGCU-CUGGAGgUACa-GGAa--GUACGG- -5'
16105 5' -53.7 NC_004065.1 + 109446 0.71 0.853438
Target:  5'- gGCCGAGACCggcgCCGgagGUCCcgcccgcUCGcGCCg -3'
miRNA:   3'- -UGGCUCUGGa---GGUa--CAGGa------AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 117555 0.68 0.949237
Target:  5'- cCUGGGAUCUCC-UGUCCcgUCA-GCUg -3'
miRNA:   3'- uGGCUCUGGAGGuACAGGa-AGUaCGG- -5'
16105 5' -53.7 NC_004065.1 + 118899 1.13 0.004417
Target:  5'- cACCGAGACCUCCAUGUCCUUCAUGCCg -3'
miRNA:   3'- -UGGCUCUGGAGGUACAGGAAGUACGG- -5'
16105 5' -53.7 NC_004065.1 + 120578 0.68 0.960707
Target:  5'- -gCGGGACCUCCGgcgCCggUCucgGCCg -3'
miRNA:   3'- ugGCUCUGGAGGUacaGGa-AGua-CGG- -5'
16105 5' -53.7 NC_004065.1 + 121200 0.66 0.982269
Target:  5'- cACCGAGGCCgUCAg--CCUgu-UGCCg -3'
miRNA:   3'- -UGGCUCUGGaGGUacaGGAaguACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.