Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16105 | 5' | -53.7 | NC_004065.1 | + | 100731 | 0.66 | 0.982269 |
Target: 5'- cAUCGugucGGCUUCCGUGUUCcagUCGUaGCCg -3' miRNA: 3'- -UGGCu---CUGGAGGUACAGGa--AGUA-CGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 121254 | 0.69 | 0.944966 |
Target: 5'- cGCCGccACCUCUagGUCCagCGUGCUc -3' miRNA: 3'- -UGGCucUGGAGGuaCAGGaaGUACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 32023 | 0.68 | 0.949237 |
Target: 5'- uCCGAGGCCaUCgcgcaGUGUCCcgUCcUGCCc -3' miRNA: 3'- uGGCUCUGG-AGg----UACAGGa-AGuACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 117555 | 0.68 | 0.949237 |
Target: 5'- cCUGGGAUCUCC-UGUCCcgUCA-GCUg -3' miRNA: 3'- uGGCUCUGGAGGuACAGGa-AGUaCGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 120578 | 0.68 | 0.960707 |
Target: 5'- -gCGGGACCUCCGgcgCCggUCucgGCCg -3' miRNA: 3'- ugGCUCUGGAGGUacaGGa-AGua-CGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 178074 | 0.67 | 0.973022 |
Target: 5'- gACCucGucucuCCUCCAUGUCCcaCAcUGCCu -3' miRNA: 3'- -UGGcuCu----GGAGGUACAGGaaGU-ACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 204111 | 0.67 | 0.973022 |
Target: 5'- uCCGAGACCUCgAUGUUCguagagaccUCAacgGUCg -3' miRNA: 3'- uGGCUCUGGAGgUACAGGa--------AGUa--CGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 76756 | 0.67 | 0.975605 |
Target: 5'- cGCCGGcGGCCUCguCAUcGUCCggcgCAUcGCCg -3' miRNA: 3'- -UGGCU-CUGGAG--GUA-CAGGaa--GUA-CGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 121200 | 0.66 | 0.982269 |
Target: 5'- cACCGAGGCCgUCAg--CCUgu-UGCCg -3' miRNA: 3'- -UGGCUCUGGaGGUacaGGAaguACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 161461 | 0.69 | 0.944966 |
Target: 5'- cCUGAGAgCUCCGgg-CCUUCGggacGCCg -3' miRNA: 3'- uGGCUCUgGAGGUacaGGAAGUa---CGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 15439 | 0.69 | 0.935735 |
Target: 5'- aACCgGAGAagUCCAUGuaucUCCUUCAUGUUc -3' miRNA: 3'- -UGG-CUCUggAGGUAC----AGGAAGUACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 24095 | 0.7 | 0.914485 |
Target: 5'- uGCCGAgGACgUCCAUGgcgCCgacgUCG-GCCu -3' miRNA: 3'- -UGGCU-CUGgAGGUACa--GGa---AGUaCGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 174674 | 0.77 | 0.56323 |
Target: 5'- cGCCGGGACCucguucuccgucgggUCCGUGUCCgUUUccGCCg -3' miRNA: 3'- -UGGCUCUGG---------------AGGUACAGG-AAGuaCGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 185028 | 0.73 | 0.767518 |
Target: 5'- uCCGAGAuCCUCCcaGUGUCCgagacUGCCa -3' miRNA: 3'- uGGCUCU-GGAGG--UACAGGaagu-ACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 44233 | 0.73 | 0.773088 |
Target: 5'- aACCGAGACCUCugCAUGaUCCUgguggggaugcuGUGCCa -3' miRNA: 3'- -UGGCUCUGGAG--GUAC-AGGAag----------UACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 103494 | 0.73 | 0.78591 |
Target: 5'- cGCUGGGACCguaacccgCCAUGUCCaUCAcGCa -3' miRNA: 3'- -UGGCUCUGGa-------GGUACAGGaAGUaCGg -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 199538 | 0.73 | 0.794909 |
Target: 5'- aGCCGGGcGCCUCCAgccgGgcgcgCCccaUCGUGCCg -3' miRNA: 3'- -UGGCUC-UGGAGGUa---Ca----GGa--AGUACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 149989 | 0.71 | 0.853438 |
Target: 5'- cACCGAGuCCUCCA-GUCCgaucUUCGacuUGCUg -3' miRNA: 3'- -UGGCUCuGGAGGUaCAGG----AAGU---ACGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 146007 | 0.71 | 0.868505 |
Target: 5'- gAUCGAGACCaguacggcgaUCCA-GUCCaUCAUcGCCg -3' miRNA: 3'- -UGGCUCUGG----------AGGUaCAGGaAGUA-CGG- -5' |
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16105 | 5' | -53.7 | NC_004065.1 | + | 37592 | 0.7 | 0.914485 |
Target: 5'- uGCCgGAGAUUUCCAUGcUCaggucgUCAUGCUg -3' miRNA: 3'- -UGG-CUCUGGAGGUAC-AGga----AGUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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