miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16106 3' -54.2 NC_004065.1 + 169674 0.66 0.98652
Target:  5'- gACAUGaCCGUGCgcacCAACGCGuACGg -3'
miRNA:   3'- -UGUACcGGCACGagcaGUUGUGC-UGC- -5'
16106 3' -54.2 NC_004065.1 + 126622 0.66 0.98652
Target:  5'- cGCGUcGGCCGUGUUUuUCAccGCACG-Ca -3'
miRNA:   3'- -UGUA-CCGGCACGAGcAGU--UGUGCuGc -5'
16106 3' -54.2 NC_004065.1 + 177386 0.66 0.984862
Target:  5'- ---cGGCCaagGUGUUCGUCgGugGCGACc -3'
miRNA:   3'- uguaCCGG---CACGAGCAG-UugUGCUGc -5'
16106 3' -54.2 NC_004065.1 + 125601 0.66 0.984862
Target:  5'- --uUGGCCGUGCgcggcggGUCGAUGCG-CGc -3'
miRNA:   3'- uguACCGGCACGag-----CAGUUGUGCuGC- -5'
16106 3' -54.2 NC_004065.1 + 122998 0.66 0.984862
Target:  5'- cCAUGGUCGUGggUGUCGGuCucCGGCGa -3'
miRNA:   3'- uGUACCGGCACgaGCAGUU-Gu-GCUGC- -5'
16106 3' -54.2 NC_004065.1 + 53874 0.66 0.984862
Target:  5'- -gAUGGCCa--CUcCGUUGGCGCGACGg -3'
miRNA:   3'- ugUACCGGcacGA-GCAGUUGUGCUGC- -5'
16106 3' -54.2 NC_004065.1 + 25986 0.66 0.983053
Target:  5'- gGCAUGaGCCa-GUUCGUaCAGCACGuCGc -3'
miRNA:   3'- -UGUAC-CGGcaCGAGCA-GUUGUGCuGC- -5'
16106 3' -54.2 NC_004065.1 + 229476 0.66 0.983053
Target:  5'- uCcgGGCCGggcgccGCUCGUCGcggaagcuucacACGCuGGCGg -3'
miRNA:   3'- uGuaCCGGCa-----CGAGCAGU------------UGUG-CUGC- -5'
16106 3' -54.2 NC_004065.1 + 222794 0.66 0.981086
Target:  5'- cACAUGGUCGaUG-UCG-C-ACACGACGa -3'
miRNA:   3'- -UGUACCGGC-ACgAGCaGuUGUGCUGC- -5'
16106 3' -54.2 NC_004065.1 + 189846 0.66 0.981086
Target:  5'- gAUcgGGaCC-UGCUCGUCGcCGCGAgGg -3'
miRNA:   3'- -UGuaCC-GGcACGAGCAGUuGUGCUgC- -5'
16106 3' -54.2 NC_004065.1 + 41953 0.66 0.981086
Target:  5'- uGCAcGGCCGgGUUC-UCGACGCuGGCGc -3'
miRNA:   3'- -UGUaCCGGCaCGAGcAGUUGUG-CUGC- -5'
16106 3' -54.2 NC_004065.1 + 105107 0.66 0.981086
Target:  5'- cGCGUGGUggccgacgaCGUGC-CGcUgGACGCGGCGc -3'
miRNA:   3'- -UGUACCG---------GCACGaGC-AgUUGUGCUGC- -5'
16106 3' -54.2 NC_004065.1 + 70318 0.66 0.981086
Target:  5'- cCGUGGUCGUcGUUCuaUCGGCGgCGACGg -3'
miRNA:   3'- uGUACCGGCA-CGAGc-AGUUGU-GCUGC- -5'
16106 3' -54.2 NC_004065.1 + 105426 0.66 0.981086
Target:  5'- uGC-UGGCCGcGCUgGUgcgggaCGugGCGACGg -3'
miRNA:   3'- -UGuACCGGCaCGAgCA------GUugUGCUGC- -5'
16106 3' -54.2 NC_004065.1 + 207239 0.66 0.978953
Target:  5'- -gGUGGCCGg--UCGUgAGgACGACGa -3'
miRNA:   3'- ugUACCGGCacgAGCAgUUgUGCUGC- -5'
16106 3' -54.2 NC_004065.1 + 17525 0.66 0.978953
Target:  5'- ---aGGUCGUGCggcccgaaGUUAACAgGACGg -3'
miRNA:   3'- uguaCCGGCACGag------CAGUUGUgCUGC- -5'
16106 3' -54.2 NC_004065.1 + 47968 0.66 0.978953
Target:  5'- -uGUGGCCGaucUGCUCcccgaaacugGUCAucCGCGACa -3'
miRNA:   3'- ugUACCGGC---ACGAG----------CAGUu-GUGCUGc -5'
16106 3' -54.2 NC_004065.1 + 218458 0.66 0.978953
Target:  5'- uCAUGGCCGUGUugUUGaUCcACACGGa- -3'
miRNA:   3'- uGUACCGGCACG--AGC-AGuUGUGCUgc -5'
16106 3' -54.2 NC_004065.1 + 18561 0.66 0.97873
Target:  5'- cGCAUGGCCGaacgGCUgcgauauucgaucCGUUAcacGCGCGAgGa -3'
miRNA:   3'- -UGUACCGGCa---CGA-------------GCAGU---UGUGCUgC- -5'
16106 3' -54.2 NC_004065.1 + 197284 0.66 0.976647
Target:  5'- cGCAUGGgCG-GCUUcUCG-CGCGACGc -3'
miRNA:   3'- -UGUACCgGCaCGAGcAGUuGUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.