miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16106 5' -60.6 NC_004065.1 + 142596 0.66 0.78908
Target:  5'- -gCCaCAGCaGCgaaGCGGUGCGCuucGGCAUg -3'
miRNA:   3'- caGGaGUCGaCG---UGCCACGCG---CCGUA- -5'
16106 5' -60.6 NC_004065.1 + 126538 0.66 0.774841
Target:  5'- cUCCaUCAGCguacgcaacacgaaGCACGGgggcGCGUGGCGc -3'
miRNA:   3'- cAGG-AGUCGa-------------CGUGCCa---CGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 34378 0.66 0.771233
Target:  5'- --gCUCGGCUGC-CGGgagGCGaGGCGa -3'
miRNA:   3'- cagGAGUCGACGuGCCa--CGCgCCGUa -5'
16106 5' -60.6 NC_004065.1 + 178701 0.66 0.752925
Target:  5'- cUCauaUCuGCUGCugGGggcaGCGgCGGCAUa -3'
miRNA:   3'- cAGg--AGuCGACGugCCa---CGC-GCCGUA- -5'
16106 5' -60.6 NC_004065.1 + 182472 0.66 0.734222
Target:  5'- -gCCUgGGUcGCugGGUGgGCGGUg- -3'
miRNA:   3'- caGGAgUCGaCGugCCACgCGCCGua -5'
16106 5' -60.6 NC_004065.1 + 139652 0.66 0.734222
Target:  5'- cUCCa-AGCUGUGCGGcgcGUGCGGCGg -3'
miRNA:   3'- cAGGagUCGACGUGCCa--CGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 208855 0.66 0.731386
Target:  5'- aGUUCUgAGCcGUucgagacggagaggACGGUGCGCGGUg- -3'
miRNA:   3'- -CAGGAgUCGaCG--------------UGCCACGCGCCGua -5'
16106 5' -60.6 NC_004065.1 + 100782 0.67 0.724743
Target:  5'- --gCUCAGCUucGCGCGGUGaCGUGGa-- -3'
miRNA:   3'- cagGAGUCGA--CGUGCCAC-GCGCCgua -5'
16106 5' -60.6 NC_004065.1 + 71669 0.67 0.715189
Target:  5'- cUCCUCAGCaGCagcaGCGGcG-GCGGCAa -3'
miRNA:   3'- cAGGAGUCGaCG----UGCCaCgCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 128906 0.67 0.715189
Target:  5'- uUCCgcaagCAGaCcGCGCGGUuCGCGGCGUu -3'
miRNA:   3'- cAGGa----GUC-GaCGUGCCAcGCGCCGUA- -5'
16106 5' -60.6 NC_004065.1 + 66640 0.67 0.715189
Target:  5'- aUCgUCGGCUucgGCGCGGUGgGCgcccGGCGa -3'
miRNA:   3'- cAGgAGUCGA---CGUGCCACgCG----CCGUa -5'
16106 5' -60.6 NC_004065.1 + 169365 0.67 0.705571
Target:  5'- cGUCUgUCAGCUcgACGcGUGCGUGGCGc -3'
miRNA:   3'- -CAGG-AGUCGAcgUGC-CACGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 112904 0.68 0.6666
Target:  5'- cGUCCggaUCAGgUGCGacaccaGG-GCGCGGCAc -3'
miRNA:   3'- -CAGG---AGUCgACGUg-----CCaCGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 56909 0.68 0.656773
Target:  5'- aUCCUCGGCUGCGguCGGaaccgcGCGuCGGCc- -3'
miRNA:   3'- cAGGAGUCGACGU--GCCa-----CGC-GCCGua -5'
16106 5' -60.6 NC_004065.1 + 200946 0.68 0.656773
Target:  5'- -gCCUCGGagcGCAgGGaGCGCGGCGg -3'
miRNA:   3'- caGGAGUCga-CGUgCCaCGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 80123 0.68 0.637071
Target:  5'- uUCUUCAGgUGCA-GGUcgucccugGCGCGGCAg -3'
miRNA:   3'- cAGGAGUCgACGUgCCA--------CGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 163482 0.69 0.597681
Target:  5'- cUCCgUCGGCgGCGcCGGUG-GCGGCGg -3'
miRNA:   3'- cAGG-AGUCGaCGU-GCCACgCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 71709 0.69 0.594736
Target:  5'- cGUCCUCucgacagaaagaccAGCagaaUGCgACGGUGaCGCGGCGc -3'
miRNA:   3'- -CAGGAG--------------UCG----ACG-UGCCAC-GCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 171788 0.69 0.5781
Target:  5'- uUCCUCAGCgaggaGCcCuucGUGCGCGGCGa -3'
miRNA:   3'- cAGGAGUCGa----CGuGc--CACGCGCCGUa -5'
16106 5' -60.6 NC_004065.1 + 229213 0.69 0.5781
Target:  5'- cGUUCUCcGgaGCGCGGUaCGUGGCAa -3'
miRNA:   3'- -CAGGAGuCgaCGUGCCAcGCGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.