Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16108 | 3' | -57.7 | NC_004065.1 | + | 207687 | 0.72 | 0.609162 |
Target: 5'- uUCUCaAGaucuuGGCCUCGUCGUGCgaCGGGg -3' miRNA: 3'- -AGAGaUC-----CCGGAGCAGCACGagGCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 192761 | 0.73 | 0.560491 |
Target: 5'- uUCUCUGGGGUggUCGUCGUG-UCCGGu -3' miRNA: 3'- -AGAGAUCCCGg-AGCAGCACgAGGCUc -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 188965 | 0.67 | 0.896346 |
Target: 5'- gCUCUucGGCUUCGUCGccgcgcgGC-CCGAGc -3' miRNA: 3'- aGAGAucCCGGAGCAGCa------CGaGGCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 158042 | 0.66 | 0.914193 |
Target: 5'- cCUCcAGGGCaugCGUCGc-CUCCGGGc -3' miRNA: 3'- aGAGaUCCCGga-GCAGCacGAGGCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 155927 | 0.68 | 0.823727 |
Target: 5'- cCUCUAGGaCCUguuucggcacCGUCGUGCUgCgCGAGu -3' miRNA: 3'- aGAGAUCCcGGA----------GCAGCACGA-G-GCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 125746 | 0.67 | 0.883384 |
Target: 5'- cCUCagacAGGGCCcggCGUCGUGUaUCgCGGGg -3' miRNA: 3'- aGAGa---UCCCGGa--GCAGCACG-AG-GCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 123181 | 0.75 | 0.458244 |
Target: 5'- gCUCUccaucAGGGCCUgCGUCGUGC-CCGuGu -3' miRNA: 3'- aGAGA-----UCCCGGA-GCAGCACGaGGCuC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 120317 | 1.09 | 0.003102 |
Target: 5'- aUCUCUAGGGCCUCGUCGUGCUCCGAGa -3' miRNA: 3'- -AGAGAUCCCGGAGCAGCACGAGGCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 116027 | 0.66 | 0.930077 |
Target: 5'- cUCUCUGccgacGGGUCUCGgUGUGUUCaagGAGa -3' miRNA: 3'- -AGAGAU-----CCCGGAGCaGCACGAGg--CUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 102045 | 0.67 | 0.882714 |
Target: 5'- aUCUC-GGGGUCUCGUCG-GCggaccugUCUGAa -3' miRNA: 3'- -AGAGaUCCCGGAGCAGCaCG-------AGGCUc -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 92073 | 0.71 | 0.687478 |
Target: 5'- gCUCggAGGGCCgcgCGUUGcgccagcaGCUCCGAGc -3' miRNA: 3'- aGAGa-UCCCGGa--GCAGCa-------CGAGGCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 78299 | 0.69 | 0.807083 |
Target: 5'- cUCUCgAGGGCCUCGgacugCGUggGCgacCCGAc -3' miRNA: 3'- -AGAGaUCCCGGAGCa----GCA--CGa--GGCUc -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 35928 | 0.67 | 0.869603 |
Target: 5'- -gUCUGcgacGCCUCccuGUCGUGCUCCGAc -3' miRNA: 3'- agAGAUcc--CGGAG---CAGCACGAGGCUc -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 32793 | 0.7 | 0.731529 |
Target: 5'- gCUCgAGGGCCUCGUUGUcgucguccucguaGCcgucgggccgcucgUCCGAGa -3' miRNA: 3'- aGAGaUCCCGGAGCAGCA-------------CG--------------AGGCUC- -5' |
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16108 | 3' | -57.7 | NC_004065.1 | + | 7219 | 0.74 | 0.541302 |
Target: 5'- cUUCUcGGGCCUCGUCGUGUg-CGAc -3' miRNA: 3'- aGAGAuCCCGGAGCAGCACGagGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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