miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16109 3' -56.7 NC_004065.1 + 112623 0.66 0.944092
Target:  5'- cGCGCCG-CGaGCcCAGCGCgCgcgGCCGa -3'
miRNA:   3'- -CGUGGCaGUaCGaGUCGUG-Ga--CGGCg -5'
16109 3' -56.7 NC_004065.1 + 174902 0.66 0.944092
Target:  5'- --uCCGUagauaacUGuCUCGGCGCC-GCCGCg -3'
miRNA:   3'- cguGGCAgu-----AC-GAGUCGUGGaCGGCG- -5'
16109 3' -56.7 NC_004065.1 + 87416 0.66 0.944092
Target:  5'- cGCACUG-CAUGC-CGaagcGCACCgcuucGCUGCu -3'
miRNA:   3'- -CGUGGCaGUACGaGU----CGUGGa----CGGCG- -5'
16109 3' -56.7 NC_004065.1 + 102390 0.66 0.944092
Target:  5'- gGCGCCG-CA-GCggCAGCGCgaGCgGUg -3'
miRNA:   3'- -CGUGGCaGUaCGa-GUCGUGgaCGgCG- -5'
16109 3' -56.7 NC_004065.1 + 130894 0.66 0.944092
Target:  5'- cCGCCGUCG-GC-C-GCACCUGCguUGCc -3'
miRNA:   3'- cGUGGCAGUaCGaGuCGUGGACG--GCG- -5'
16109 3' -56.7 NC_004065.1 + 163480 0.66 0.944092
Target:  5'- aGCuCCGUCGg---CGGCGCCggugGCgGCg -3'
miRNA:   3'- -CGuGGCAGUacgaGUCGUGGa---CGgCG- -5'
16109 3' -56.7 NC_004065.1 + 196482 0.66 0.944092
Target:  5'- uGCAgCGUCuccUGCcCGagcGCAUCUGCCaGCa -3'
miRNA:   3'- -CGUgGCAGu--ACGaGU---CGUGGACGG-CG- -5'
16109 3' -56.7 NC_004065.1 + 45540 0.66 0.944092
Target:  5'- gGCGCCG-CG-GCggCGGCGgCaGCCGCc -3'
miRNA:   3'- -CGUGGCaGUaCGa-GUCGUgGaCGGCG- -5'
16109 3' -56.7 NC_004065.1 + 163409 0.66 0.944092
Target:  5'- aGCGCCG-CA-GCccgCGGCuccggauCCUGuCCGCg -3'
miRNA:   3'- -CGUGGCaGUaCGa--GUCGu------GGAC-GGCG- -5'
16109 3' -56.7 NC_004065.1 + 223105 0.66 0.944092
Target:  5'- aCGCCGaggcCGUGCccgCAGCugaaGCC-GCCGCg -3'
miRNA:   3'- cGUGGCa---GUACGa--GUCG----UGGaCGGCG- -5'
16109 3' -56.7 NC_004065.1 + 213179 0.66 0.944092
Target:  5'- uCGCCGUgCGUGCgCAGaa-CUGCgGCg -3'
miRNA:   3'- cGUGGCA-GUACGaGUCgugGACGgCG- -5'
16109 3' -56.7 NC_004065.1 + 194443 0.66 0.944092
Target:  5'- gGCGCCucggucgaagcgGUUggGCacggCGGCGCC-GCCGCu -3'
miRNA:   3'- -CGUGG------------CAGuaCGa---GUCGUGGaCGGCG- -5'
16109 3' -56.7 NC_004065.1 + 45817 0.66 0.943655
Target:  5'- aCGCCG-CGUGCgggugggcauguaUCGG-ACCgGCCGCa -3'
miRNA:   3'- cGUGGCaGUACG-------------AGUCgUGGaCGGCG- -5'
16109 3' -56.7 NC_004065.1 + 79637 0.66 0.942775
Target:  5'- cGCugCGggCGUGCgugUCGGCGCUgaugacccgggaggUGCCGa -3'
miRNA:   3'- -CGugGCa-GUACG---AGUCGUGG--------------ACGGCg -5'
16109 3' -56.7 NC_004065.1 + 135617 0.66 0.940079
Target:  5'- -gGCCGUCAcGCgggucuaCGGCGCCaccagccgacagcucGCCGCg -3'
miRNA:   3'- cgUGGCAGUaCGa------GUCGUGGa--------------CGGCG- -5'
16109 3' -56.7 NC_004065.1 + 158340 0.66 0.939622
Target:  5'- cGCGCCGcUCccguUGCcgccgCcGCugCUGCUGCu -3'
miRNA:   3'- -CGUGGC-AGu---ACGa----GuCGugGACGGCG- -5'
16109 3' -56.7 NC_004065.1 + 125135 0.66 0.939622
Target:  5'- cGCGCCGUC--GCcCAGCcgcguggcgAUCaGCCGCa -3'
miRNA:   3'- -CGUGGCAGuaCGaGUCG---------UGGaCGGCG- -5'
16109 3' -56.7 NC_004065.1 + 77068 0.66 0.939622
Target:  5'- -gGCCGagAUccGCgagCuGUGCCUGCCGCu -3'
miRNA:   3'- cgUGGCagUA--CGa--GuCGUGGACGGCG- -5'
16109 3' -56.7 NC_004065.1 + 144528 0.66 0.939622
Target:  5'- aGCGCCagcgaCAUgGC-CAGCACCaugGUCGCg -3'
miRNA:   3'- -CGUGGca---GUA-CGaGUCGUGGa--CGGCG- -5'
16109 3' -56.7 NC_004065.1 + 180281 0.66 0.939622
Target:  5'- cGCGCCGUCAgUG-UCGGaCACCgGuCCGa -3'
miRNA:   3'- -CGUGGCAGU-ACgAGUC-GUGGaC-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.