miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16109 5' -55.9 NC_004065.1 + 77975 0.66 0.961084
Target:  5'- --cCGAgacgCUGGCcgcGGCgagCcGCCCCGGGa -3'
miRNA:   3'- cauGCUa---GACCG---UCGa--GuUGGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 65906 0.66 0.961084
Target:  5'- --uCGAUCUcGGCAGac--GCCCCGGu -3'
miRNA:   3'- cauGCUAGA-CCGUCgaguUGGGGCCu -5'
16109 5' -55.9 NC_004065.1 + 224857 0.66 0.95378
Target:  5'- -gACGGUCugcggUGGCAGUUUgAGCCauCCGGAc -3'
miRNA:   3'- caUGCUAG-----ACCGUCGAG-UUGG--GGCCU- -5'
16109 5' -55.9 NC_004065.1 + 37495 0.66 0.949802
Target:  5'- uGUGCGGacccCUGGCGGCUCuccGCCaagCGGu -3'
miRNA:   3'- -CAUGCUa---GACCGUCGAGu--UGGg--GCCu -5'
16109 5' -55.9 NC_004065.1 + 125848 0.66 0.949802
Target:  5'- -cACGGUCgugGGCAGCUgGuUCUCGGc -3'
miRNA:   3'- caUGCUAGa--CCGUCGAgUuGGGGCCu -5'
16109 5' -55.9 NC_004065.1 + 68770 0.66 0.949802
Target:  5'- -gGCGGUgCUGGCGGCcuUCAagGCCgugUCGGAg -3'
miRNA:   3'- caUGCUA-GACCGUCG--AGU--UGG---GGCCU- -5'
16109 5' -55.9 NC_004065.1 + 229590 0.66 0.947309
Target:  5'- -cGCGAg--GGCGGCUCcaggggguucaccCCCCGGGc -3'
miRNA:   3'- caUGCUagaCCGUCGAGuu-----------GGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 66126 0.66 0.945602
Target:  5'- --cCGAggcgCUGGCGcGCUgGGCCgCGGAc -3'
miRNA:   3'- cauGCUa---GACCGU-CGAgUUGGgGCCU- -5'
16109 5' -55.9 NC_004065.1 + 55599 0.66 0.945602
Target:  5'- -cACGAggaugGGCGcGUUCAcccagACCCCGGAc -3'
miRNA:   3'- caUGCUaga--CCGU-CGAGU-----UGGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 114221 0.66 0.945602
Target:  5'- -cACGGUCUGacaccggccGCAGUUucCGugCCCGGGa -3'
miRNA:   3'- caUGCUAGAC---------CGUCGA--GUugGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 133066 0.66 0.945602
Target:  5'- -cACGGUUcccucGGCgAGCUgGACCUCGGGa -3'
miRNA:   3'- caUGCUAGa----CCG-UCGAgUUGGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 116009 0.66 0.945602
Target:  5'- cGUGCGccgCgggGGCAGCUCucuGCCgaCGGGu -3'
miRNA:   3'- -CAUGCua-Ga--CCGUCGAGu--UGGg-GCCU- -5'
16109 5' -55.9 NC_004065.1 + 3560 0.66 0.941178
Target:  5'- -aGCGGcgCUGGCAGaaggCGAgCCCGGu -3'
miRNA:   3'- caUGCUa-GACCGUCga--GUUgGGGCCu -5'
16109 5' -55.9 NC_004065.1 + 75118 0.66 0.941178
Target:  5'- -cACGAUCcGGCGGCUuCGAUCgCGcGAu -3'
miRNA:   3'- caUGCUAGaCCGUCGA-GUUGGgGC-CU- -5'
16109 5' -55.9 NC_004065.1 + 573 0.66 0.941178
Target:  5'- -aACGGggCUGGCGGCagCGccACCCCGuGGu -3'
miRNA:   3'- caUGCUa-GACCGUCGa-GU--UGGGGC-CU- -5'
16109 5' -55.9 NC_004065.1 + 78280 0.66 0.941178
Target:  5'- cGUGCGGuggUCguaGCGGCUCucgagGGCCUCGGAc -3'
miRNA:   3'- -CAUGCU---AGac-CGUCGAG-----UUGGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 198274 0.67 0.936528
Target:  5'- cGUGCGAucuccauuUCUGGCGgaugcacccGCUCAugUgCGGGg -3'
miRNA:   3'- -CAUGCU--------AGACCGU---------CGAGUugGgGCCU- -5'
16109 5' -55.9 NC_004065.1 + 176334 0.67 0.936528
Target:  5'- -gGCGGUCgGGCGGCgacaCGAUCaUCGGAu -3'
miRNA:   3'- caUGCUAGaCCGUCGa---GUUGG-GGCCU- -5'
16109 5' -55.9 NC_004065.1 + 38775 0.67 0.936528
Target:  5'- -gACGAggCUGGaucacaucaaguCGGCgaucagCAACCCCGGGc -3'
miRNA:   3'- caUGCUa-GACC------------GUCGa-----GUUGGGGCCU- -5'
16109 5' -55.9 NC_004065.1 + 188541 0.67 0.936528
Target:  5'- -aGgGAUCgaUGGUugaaccccAGCUCGAgCCCGGAg -3'
miRNA:   3'- caUgCUAG--ACCG--------UCGAGUUgGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.