miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1611 3' -50.9 NC_001347.2 + 215798 0.66 0.999198
Target:  5'- ------gCAUCGAUCgaucaggaggaGGCGcGAUCGCCa -3'
miRNA:   3'- caaaccaGUAGCUAG-----------CCGC-CUAGUGG- -5'
1611 3' -50.9 NC_001347.2 + 229519 0.66 0.999182
Target:  5'- uUUUGGgugUGUCGGggcgCGGCGGGUgggugugUGCCg -3'
miRNA:   3'- cAAACCa--GUAGCUa---GCCGCCUA-------GUGG- -5'
1611 3' -50.9 NC_001347.2 + 154972 0.66 0.999025
Target:  5'- -gUUGGUCGcaUUGGUgaguaCGGUGGAUUGCg -3'
miRNA:   3'- caAACCAGU--AGCUA-----GCCGCCUAGUGg -5'
1611 3' -50.9 NC_001347.2 + 144119 0.66 0.998821
Target:  5'- ---aGGUUAUCGucaagCgGGUGGGcaUCACCa -3'
miRNA:   3'- caaaCCAGUAGCua---G-CCGCCU--AGUGG- -5'
1611 3' -50.9 NC_001347.2 + 23722 0.66 0.99873
Target:  5'- ---aGGUCAUCgucacgcuguuuguGAUCGGCGuuaucgcguucuuGAUCGCa -3'
miRNA:   3'- caaaCCAGUAG--------------CUAGCCGC-------------CUAGUGg -5'
1611 3' -50.9 NC_001347.2 + 139063 0.66 0.998556
Target:  5'- --gUGGUgAUCGcuccuuuGUUGGCGGGgcUCACg -3'
miRNA:   3'- caaACCAgUAGC-------UAGCCGCCU--AGUGg -5'
1611 3' -50.9 NC_001347.2 + 85288 0.66 0.997978
Target:  5'- ---aGG-UAUCGG-CGGCGGcgaAUCGCCc -3'
miRNA:   3'- caaaCCaGUAGCUaGCCGCC---UAGUGG- -5'
1611 3' -50.9 NC_001347.2 + 208102 0.67 0.997603
Target:  5'- --aUGGgcgCAcCGA-CGGCGGAgccgcgucgcUCGCCg -3'
miRNA:   3'- caaACCa--GUaGCUaGCCGCCU----------AGUGG- -5'
1611 3' -50.9 NC_001347.2 + 86661 0.67 0.997563
Target:  5'- ---cGGUUAcUCGGggaacagUUGGCGGcaGUCACCg -3'
miRNA:   3'- caaaCCAGU-AGCU-------AGCCGCC--UAGUGG- -5'
1611 3' -50.9 NC_001347.2 + 124205 0.67 0.997172
Target:  5'- --cUGGUgAUCGGUC--CGGGUCACa -3'
miRNA:   3'- caaACCAgUAGCUAGccGCCUAGUGg -5'
1611 3' -50.9 NC_001347.2 + 93664 0.67 0.996116
Target:  5'- ---cGGUCGUgCgGAUCGGUGGcgUACa -3'
miRNA:   3'- caaaCCAGUA-G-CUAGCCGCCuaGUGg -5'
1611 3' -50.9 NC_001347.2 + 153250 0.67 0.996116
Target:  5'- ---cGGcCggCGA-CGGCGGuUCGCCg -3'
miRNA:   3'- caaaCCaGuaGCUaGCCGCCuAGUGG- -5'
1611 3' -50.9 NC_001347.2 + 10125 0.67 0.996116
Target:  5'- ---cGGUCGUCGucGUCGGUGucauGAUagCACCa -3'
miRNA:   3'- caaaCCAGUAGC--UAGCCGC----CUA--GUGG- -5'
1611 3' -50.9 NC_001347.2 + 77114 0.68 0.993944
Target:  5'- ---cGGUCGUCGuugccgCGGCGGuagUugCg -3'
miRNA:   3'- caaaCCAGUAGCua----GCCGCCua-GugG- -5'
1611 3' -50.9 NC_001347.2 + 59121 0.68 0.992018
Target:  5'- ---cGGcCAUCaGAgcagCGGCGGGgcgagCACCg -3'
miRNA:   3'- caaaCCaGUAG-CUa---GCCGCCUa----GUGG- -5'
1611 3' -50.9 NC_001347.2 + 225543 0.68 0.990888
Target:  5'- --cUGGUCGUCGGcgcUCGGaCGGAUgGg- -3'
miRNA:   3'- caaACCAGUAGCU---AGCC-GCCUAgUgg -5'
1611 3' -50.9 NC_001347.2 + 36444 0.69 0.98673
Target:  5'- ---cGGUcCGUCGAgacCGGCGGA-CGCg -3'
miRNA:   3'- caaaCCA-GUAGCUa--GCCGCCUaGUGg -5'
1611 3' -50.9 NC_001347.2 + 163437 0.7 0.979087
Target:  5'- --aUGGUCuguUCGuUgGGCGGAUCGUCg -3'
miRNA:   3'- caaACCAGu--AGCuAgCCGCCUAGUGG- -5'
1611 3' -50.9 NC_001347.2 + 207966 0.72 0.946542
Target:  5'- --cUGGUgAUCGGUCcgcguacaGGCGGAcguuucauUCGCCg -3'
miRNA:   3'- caaACCAgUAGCUAG--------CCGCCU--------AGUGG- -5'
1611 3' -50.9 NC_001347.2 + 81481 0.76 0.822207
Target:  5'- --gUGGcgUCGUCGcUCGGCGGGUgcgCACCg -3'
miRNA:   3'- caaACC--AGUAGCuAGCCGCCUA---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.