miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 3' -58.1 NC_004065.1 + 81384 0.66 0.900711
Target:  5'- -cACGGcGUCCUGCAggcaguacuugcccaCC-CGGGCCCGu -3'
miRNA:   3'- cuUGUC-CAGGACGUa--------------GGcGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 38784 0.66 0.900092
Target:  5'- cGGGCugacGGUCUgGCGcCCGCaGAGCCCc -3'
miRNA:   3'- -CUUGu---CCAGGaCGUaGGCG-CUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 153197 0.66 0.900092
Target:  5'- --cCAGGcCCUGUAcaUCGCGAGCgCCGc -3'
miRNA:   3'- cuuGUCCaGGACGUa-GGCGCUCG-GGU- -5'
16112 3' -58.1 NC_004065.1 + 208378 0.66 0.900092
Target:  5'- cGGACAGGUCUUGgacgugauUAUCgGCuGGGCCUc -3'
miRNA:   3'- -CUUGUCCAGGAC--------GUAGgCG-CUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 96067 0.66 0.900092
Target:  5'- -uAUAGG-CUUGCccGUCCGCGGGUCUc -3'
miRNA:   3'- cuUGUCCaGGACG--UAGGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 90236 0.66 0.89378
Target:  5'- cAAgAGGUCg-GCGUCgGCGAagGCCCGc -3'
miRNA:   3'- cUUgUCCAGgaCGUAGgCGCU--CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 199725 0.66 0.887254
Target:  5'- cGAAaAGGaUCCUGCccgacCCGCaGGCCCAc -3'
miRNA:   3'- -CUUgUCC-AGGACGua---GGCGcUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 53793 0.66 0.887254
Target:  5'- nAGCAGGUCUgcGCgGUCCGCcgaGAGCCg- -3'
miRNA:   3'- cUUGUCCAGGa-CG-UAGGCG---CUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 107742 0.66 0.883236
Target:  5'- cGAuCAGGUCCUGCAUggucacugagcuggCCGgCGGgggguuaggacgccGCCCGg -3'
miRNA:   3'- -CUuGUCCAGGACGUA--------------GGC-GCU--------------CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 121466 0.66 0.873571
Target:  5'- cGAcCAGGUCggucggcGCGUCCGCGGGCgUg -3'
miRNA:   3'- -CUuGUCCAGga-----CGUAGGCGCUCGgGu -5'
16112 3' -58.1 NC_004065.1 + 101124 0.66 0.873571
Target:  5'- -cGCGcGGUCUgcuUGCGgaaCCGCGAGCCg- -3'
miRNA:   3'- cuUGU-CCAGG---ACGUa--GGCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 66609 0.66 0.873571
Target:  5'- cGGACAGGaUCCgGag-CCGCGGGCUg- -3'
miRNA:   3'- -CUUGUCC-AGGaCguaGGCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 90646 0.66 0.866422
Target:  5'- uGAGCAGGgagUCCUGCG-CCGaCGgguugcuguuGGCCCc -3'
miRNA:   3'- -CUUGUCC---AGGACGUaGGC-GC----------UCGGGu -5'
16112 3' -58.1 NC_004065.1 + 54142 0.66 0.866422
Target:  5'- gGAACAGGUgCCacaaccGCAUCCggaacaGUGAGCUCGa -3'
miRNA:   3'- -CUUGUCCA-GGa-----CGUAGG------CGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 196123 0.67 0.859077
Target:  5'- cGGCGGGUacgGCAUCCGCGGuCUCAc -3'
miRNA:   3'- cUUGUCCAggaCGUAGGCGCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 136414 0.67 0.851538
Target:  5'- gGAGCuGGUCCUGgGggcCCGgUGAGCCgAg -3'
miRNA:   3'- -CUUGuCCAGGACgUa--GGC-GCUCGGgU- -5'
16112 3' -58.1 NC_004065.1 + 136673 0.67 0.851538
Target:  5'- cGGGCGGGUCUgGCcggCgGCGGGCCg- -3'
miRNA:   3'- -CUUGUCCAGGaCGua-GgCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 223492 0.67 0.851538
Target:  5'- uGACGGGUC--GCAUCCGUuAGCCUu -3'
miRNA:   3'- cUUGUCCAGgaCGUAGGCGcUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 88466 0.67 0.843813
Target:  5'- -cGCAGGUCUUGCG--CGCGAcGCCgAa -3'
miRNA:   3'- cuUGUCCAGGACGUagGCGCU-CGGgU- -5'
16112 3' -58.1 NC_004065.1 + 133787 0.67 0.819582
Target:  5'- -uGCGGGUCUUGgAUCuCGCGGuGUCCu -3'
miRNA:   3'- cuUGUCCAGGACgUAG-GCGCU-CGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.