miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 3' -58.1 NC_004065.1 + 123842 1.08 0.003202
Target:  5'- gGAACAGGUCCUGCAUCCGCGAGCCCAu -3'
miRNA:   3'- -CUUGUCCAGGACGUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 43090 0.77 0.33662
Target:  5'- cGGAC-GGUCCggGCAUCCGCGA-CCCGg -3'
miRNA:   3'- -CUUGuCCAGGa-CGUAGGCGCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 21607 0.76 0.366901
Target:  5'- -uGCAGGUCCUGCAacucguagccgcUCUGgGAGgCCCAg -3'
miRNA:   3'- cuUGUCCAGGACGU------------AGGCgCUC-GGGU- -5'
16112 3' -58.1 NC_004065.1 + 87377 0.76 0.374758
Target:  5'- aGAGCAGGcCCUGCAUCCGCcGGUUg- -3'
miRNA:   3'- -CUUGUCCaGGACGUAGGCGcUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 206379 0.75 0.407307
Target:  5'- uGAACGGGcUCCUGCGUCgGCccGAGgCCAg -3'
miRNA:   3'- -CUUGUCC-AGGACGUAGgCG--CUCgGGU- -5'
16112 3' -58.1 NC_004065.1 + 143956 0.74 0.477408
Target:  5'- --uCAGGUUCgccGaCAUCCGCGAGCUCAa -3'
miRNA:   3'- cuuGUCCAGGa--C-GUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 4890 0.73 0.533673
Target:  5'- gGAGgAGcGUCC-GCGUCC-CGAGCCCAu -3'
miRNA:   3'- -CUUgUC-CAGGaCGUAGGcGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 162744 0.71 0.611882
Target:  5'- --cCAGGUCCUGCGucUCCGcCGuGCCg- -3'
miRNA:   3'- cuuGUCCAGGACGU--AGGC-GCuCGGgu -5'
16112 3' -58.1 NC_004065.1 + 53770 0.71 0.641618
Target:  5'- --uCAGG-CUggaGgAUCCGCGAGCCCAg -3'
miRNA:   3'- cuuGUCCaGGa--CgUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 109127 0.71 0.651526
Target:  5'- -uGCGGGUgCUGUcgCCGCGAgacgccGCCCu -3'
miRNA:   3'- cuUGUCCAgGACGuaGGCGCU------CGGGu -5'
16112 3' -58.1 NC_004065.1 + 100385 0.7 0.700692
Target:  5'- --uCAGGUCCUuggGCAgcagCCgGCGGGUCCAg -3'
miRNA:   3'- cuuGUCCAGGA---CGUa---GG-CGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 136310 0.7 0.700692
Target:  5'- gGAGCuGGUCCUGgagGUCCGgUGAGCCgAg -3'
miRNA:   3'- -CUUGuCCAGGACg--UAGGC-GCUCGGgU- -5'
16112 3' -58.1 NC_004065.1 + 169390 0.69 0.720036
Target:  5'- -uGCcuGUCgCUGCAcaggUCCGCGAGCCUc -3'
miRNA:   3'- cuUGucCAG-GACGU----AGGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 136580 0.69 0.720036
Target:  5'- gGAGCuGGUCCUGCGgUCCGgGGaUCCGg -3'
miRNA:   3'- -CUUGuCCAGGACGU-AGGCgCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 164174 0.69 0.757808
Target:  5'- cAugAGGUCCUuaAUugacUCGCGGGCCCu -3'
miRNA:   3'- cUugUCCAGGAcgUA----GGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 162088 0.69 0.757808
Target:  5'- cGAACGGGUgCUcGUaccacGUCCGCGuGUCCGa -3'
miRNA:   3'- -CUUGUCCAgGA-CG-----UAGGCGCuCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 122229 0.69 0.767011
Target:  5'- cGAGCGGGccggcgggucguUCCUGUcgCCGCugcuGCCCGc -3'
miRNA:   3'- -CUUGUCC------------AGGACGuaGGCGcu--CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 111992 0.69 0.770661
Target:  5'- cGAGCAGGgccgCCUGauccUCCGUcgggaggaggacgagGAGCCCGa -3'
miRNA:   3'- -CUUGUCCa---GGACgu--AGGCG---------------CUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 149967 0.68 0.776102
Target:  5'- --uCAGGUCCUGCAggaaagacUCCacCGAGUCCu -3'
miRNA:   3'- cuuGUCCAGGACGU--------AGGc-GCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 28808 0.68 0.785072
Target:  5'- -cGCGGGUCCUcugcacgcacGUcgCCGCGccGCCCGa -3'
miRNA:   3'- cuUGUCCAGGA----------CGuaGGCGCu-CGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.