Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16112 | 3' | -58.1 | NC_004065.1 | + | 81384 | 0.66 | 0.900711 |
Target: 5'- -cACGGcGUCCUGCAggcaguacuugcccaCC-CGGGCCCGu -3' miRNA: 3'- cuUGUC-CAGGACGUa--------------GGcGCUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 38784 | 0.66 | 0.900092 |
Target: 5'- cGGGCugacGGUCUgGCGcCCGCaGAGCCCc -3' miRNA: 3'- -CUUGu---CCAGGaCGUaGGCG-CUCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 153197 | 0.66 | 0.900092 |
Target: 5'- --cCAGGcCCUGUAcaUCGCGAGCgCCGc -3' miRNA: 3'- cuuGUCCaGGACGUa-GGCGCUCG-GGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 208378 | 0.66 | 0.900092 |
Target: 5'- cGGACAGGUCUUGgacgugauUAUCgGCuGGGCCUc -3' miRNA: 3'- -CUUGUCCAGGAC--------GUAGgCG-CUCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 96067 | 0.66 | 0.900092 |
Target: 5'- -uAUAGG-CUUGCccGUCCGCGGGUCUc -3' miRNA: 3'- cuUGUCCaGGACG--UAGGCGCUCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 90236 | 0.66 | 0.89378 |
Target: 5'- cAAgAGGUCg-GCGUCgGCGAagGCCCGc -3' miRNA: 3'- cUUgUCCAGgaCGUAGgCGCU--CGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 199725 | 0.66 | 0.887254 |
Target: 5'- cGAAaAGGaUCCUGCccgacCCGCaGGCCCAc -3' miRNA: 3'- -CUUgUCC-AGGACGua---GGCGcUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 53793 | 0.66 | 0.887254 |
Target: 5'- nAGCAGGUCUgcGCgGUCCGCcgaGAGCCg- -3' miRNA: 3'- cUUGUCCAGGa-CG-UAGGCG---CUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 107742 | 0.66 | 0.883236 |
Target: 5'- cGAuCAGGUCCUGCAUggucacugagcuggCCGgCGGgggguuaggacgccGCCCGg -3' miRNA: 3'- -CUuGUCCAGGACGUA--------------GGC-GCU--------------CGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 121466 | 0.66 | 0.873571 |
Target: 5'- cGAcCAGGUCggucggcGCGUCCGCGGGCgUg -3' miRNA: 3'- -CUuGUCCAGga-----CGUAGGCGCUCGgGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 101124 | 0.66 | 0.873571 |
Target: 5'- -cGCGcGGUCUgcuUGCGgaaCCGCGAGCCg- -3' miRNA: 3'- cuUGU-CCAGG---ACGUa--GGCGCUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 66609 | 0.66 | 0.873571 |
Target: 5'- cGGACAGGaUCCgGag-CCGCGGGCUg- -3' miRNA: 3'- -CUUGUCC-AGGaCguaGGCGCUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 90646 | 0.66 | 0.866422 |
Target: 5'- uGAGCAGGgagUCCUGCG-CCGaCGgguugcuguuGGCCCc -3' miRNA: 3'- -CUUGUCC---AGGACGUaGGC-GC----------UCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 54142 | 0.66 | 0.866422 |
Target: 5'- gGAACAGGUgCCacaaccGCAUCCggaacaGUGAGCUCGa -3' miRNA: 3'- -CUUGUCCA-GGa-----CGUAGG------CGCUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 196123 | 0.67 | 0.859077 |
Target: 5'- cGGCGGGUacgGCAUCCGCGGuCUCAc -3' miRNA: 3'- cUUGUCCAggaCGUAGGCGCUcGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 136414 | 0.67 | 0.851538 |
Target: 5'- gGAGCuGGUCCUGgGggcCCGgUGAGCCgAg -3' miRNA: 3'- -CUUGuCCAGGACgUa--GGC-GCUCGGgU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 136673 | 0.67 | 0.851538 |
Target: 5'- cGGGCGGGUCUgGCcggCgGCGGGCCg- -3' miRNA: 3'- -CUUGUCCAGGaCGua-GgCGCUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 223492 | 0.67 | 0.851538 |
Target: 5'- uGACGGGUC--GCAUCCGUuAGCCUu -3' miRNA: 3'- cUUGUCCAGgaCGUAGGCGcUCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 88466 | 0.67 | 0.843813 |
Target: 5'- -cGCAGGUCUUGCG--CGCGAcGCCgAa -3' miRNA: 3'- cuUGUCCAGGACGUagGCGCU-CGGgU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 133787 | 0.67 | 0.819582 |
Target: 5'- -uGCGGGUCUUGgAUCuCGCGGuGUCCu -3' miRNA: 3'- cuUGUCCAGGACgUAG-GCGCU-CGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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