miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 3' -58.1 NC_004065.1 + 120818 0.68 0.811175
Target:  5'- uGAACAGG-CCcGCGUaCGCG-GCCCu -3'
miRNA:   3'- -CUUGUCCaGGaCGUAgGCGCuCGGGu -5'
16112 3' -58.1 NC_004065.1 + 121466 0.66 0.873571
Target:  5'- cGAcCAGGUCggucggcGCGUCCGCGGGCgUg -3'
miRNA:   3'- -CUuGUCCAGga-----CGUAGGCGCUCGgGu -5'
16112 3' -58.1 NC_004065.1 + 122229 0.69 0.767011
Target:  5'- cGAGCGGGccggcgggucguUCCUGUcgCCGCugcuGCCCGc -3'
miRNA:   3'- -CUUGUCC------------AGGACGuaGGCGcu--CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 123842 1.08 0.003202
Target:  5'- gGAACAGGUCCUGCAUCCGCGAGCCCAu -3'
miRNA:   3'- -CUUGUCCAGGACGUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 133787 0.67 0.819582
Target:  5'- -uGCGGGUCUUGgAUCuCGCGGuGUCCu -3'
miRNA:   3'- cuUGUCCAGGACgUAG-GCGCU-CGGGu -5'
16112 3' -58.1 NC_004065.1 + 136310 0.7 0.700692
Target:  5'- gGAGCuGGUCCUGgagGUCCGgUGAGCCgAg -3'
miRNA:   3'- -CUUGuCCAGGACg--UAGGC-GCUCGGgU- -5'
16112 3' -58.1 NC_004065.1 + 136414 0.67 0.851538
Target:  5'- gGAGCuGGUCCUGgGggcCCGgUGAGCCgAg -3'
miRNA:   3'- -CUUGuCCAGGACgUa--GGC-GCUCGGgU- -5'
16112 3' -58.1 NC_004065.1 + 136580 0.69 0.720036
Target:  5'- gGAGCuGGUCCUGCGgUCCGgGGaUCCGg -3'
miRNA:   3'- -CUUGuCCAGGACGU-AGGCgCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 136673 0.67 0.851538
Target:  5'- cGGGCGGGUCUgGCcggCgGCGGGCCg- -3'
miRNA:   3'- -CUUGUCCAGGaCGua-GgCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 143956 0.74 0.477408
Target:  5'- --uCAGGUUCgccGaCAUCCGCGAGCUCAa -3'
miRNA:   3'- cuuGUCCAGGa--C-GUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 149967 0.68 0.776102
Target:  5'- --uCAGGUCCUGCAggaaagacUCCacCGAGUCCu -3'
miRNA:   3'- cuuGUCCAGGACGU--------AGGc-GCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 153197 0.66 0.900092
Target:  5'- --cCAGGcCCUGUAcaUCGCGAGCgCCGc -3'
miRNA:   3'- cuuGUCCaGGACGUa-GGCGCUCG-GGU- -5'
16112 3' -58.1 NC_004065.1 + 162088 0.69 0.757808
Target:  5'- cGAACGGGUgCUcGUaccacGUCCGCGuGUCCGa -3'
miRNA:   3'- -CUUGUCCAgGA-CG-----UAGGCGCuCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 162744 0.71 0.611882
Target:  5'- --cCAGGUCCUGCGucUCCGcCGuGCCg- -3'
miRNA:   3'- cuuGUCCAGGACGU--AGGC-GCuCGGgu -5'
16112 3' -58.1 NC_004065.1 + 164174 0.69 0.757808
Target:  5'- cAugAGGUCCUuaAUugacUCGCGGGCCCu -3'
miRNA:   3'- cUugUCCAGGAcgUA----GGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 169390 0.69 0.720036
Target:  5'- -uGCcuGUCgCUGCAcaggUCCGCGAGCCUc -3'
miRNA:   3'- cuUGucCAG-GACGU----AGGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 194272 0.68 0.811175
Target:  5'- cGACAGGgccacgccgUCCUGCAaCCGCGAucugGCgCCGa -3'
miRNA:   3'- cUUGUCC---------AGGACGUaGGCGCU----CG-GGU- -5'
16112 3' -58.1 NC_004065.1 + 196123 0.67 0.859077
Target:  5'- cGGCGGGUacgGCAUCCGCGGuCUCAc -3'
miRNA:   3'- cUUGUCCAggaCGUAGGCGCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 199725 0.66 0.887254
Target:  5'- cGAAaAGGaUCCUGCccgacCCGCaGGCCCAc -3'
miRNA:   3'- -CUUgUCC-AGGACGua---GGCGcUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 206379 0.75 0.407307
Target:  5'- uGAACGGGcUCCUGCGUCgGCccGAGgCCAg -3'
miRNA:   3'- -CUUGUCC-AGGACGUAGgCG--CUCgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.