Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16112 | 3' | -58.1 | NC_004065.1 | + | 122229 | 0.69 | 0.767011 |
Target: 5'- cGAGCGGGccggcgggucguUCCUGUcgCCGCugcuGCCCGc -3' miRNA: 3'- -CUUGUCC------------AGGACGuaGGCGcu--CGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 121466 | 0.66 | 0.873571 |
Target: 5'- cGAcCAGGUCggucggcGCGUCCGCGGGCgUg -3' miRNA: 3'- -CUuGUCCAGga-----CGUAGGCGCUCGgGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 120818 | 0.68 | 0.811175 |
Target: 5'- uGAACAGG-CCcGCGUaCGCG-GCCCu -3' miRNA: 3'- -CUUGUCCaGGaCGUAgGCGCuCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 111992 | 0.69 | 0.770661 |
Target: 5'- cGAGCAGGgccgCCUGauccUCCGUcgggaggaggacgagGAGCCCGa -3' miRNA: 3'- -CUUGUCCa---GGACgu--AGGCG---------------CUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 109127 | 0.71 | 0.651526 |
Target: 5'- -uGCGGGUgCUGUcgCCGCGAgacgccGCCCu -3' miRNA: 3'- cuUGUCCAgGACGuaGGCGCU------CGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 107742 | 0.66 | 0.883236 |
Target: 5'- cGAuCAGGUCCUGCAUggucacugagcuggCCGgCGGgggguuaggacgccGCCCGg -3' miRNA: 3'- -CUuGUCCAGGACGUA--------------GGC-GCU--------------CGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 101124 | 0.66 | 0.873571 |
Target: 5'- -cGCGcGGUCUgcuUGCGgaaCCGCGAGCCg- -3' miRNA: 3'- cuUGU-CCAGG---ACGUa--GGCGCUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 100385 | 0.7 | 0.700692 |
Target: 5'- --uCAGGUCCUuggGCAgcagCCgGCGGGUCCAg -3' miRNA: 3'- cuuGUCCAGGA---CGUa---GG-CGCUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 96067 | 0.66 | 0.900092 |
Target: 5'- -uAUAGG-CUUGCccGUCCGCGGGUCUc -3' miRNA: 3'- cuUGUCCaGGACG--UAGGCGCUCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 90646 | 0.66 | 0.866422 |
Target: 5'- uGAGCAGGgagUCCUGCG-CCGaCGgguugcuguuGGCCCc -3' miRNA: 3'- -CUUGUCC---AGGACGUaGGC-GC----------UCGGGu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 90236 | 0.66 | 0.89378 |
Target: 5'- cAAgAGGUCg-GCGUCgGCGAagGCCCGc -3' miRNA: 3'- cUUgUCCAGgaCGUAGgCGCU--CGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 88466 | 0.67 | 0.843813 |
Target: 5'- -cGCAGGUCUUGCG--CGCGAcGCCgAa -3' miRNA: 3'- cuUGUCCAGGACGUagGCGCU-CGGgU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 87377 | 0.76 | 0.374758 |
Target: 5'- aGAGCAGGcCCUGCAUCCGCcGGUUg- -3' miRNA: 3'- -CUUGUCCaGGACGUAGGCGcUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 81384 | 0.66 | 0.900711 |
Target: 5'- -cACGGcGUCCUGCAggcaguacuugcccaCC-CGGGCCCGu -3' miRNA: 3'- cuUGUC-CAGGACGUa--------------GGcGCUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 66609 | 0.66 | 0.873571 |
Target: 5'- cGGACAGGaUCCgGag-CCGCGGGCUg- -3' miRNA: 3'- -CUUGUCC-AGGaCguaGGCGCUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 54142 | 0.66 | 0.866422 |
Target: 5'- gGAACAGGUgCCacaaccGCAUCCggaacaGUGAGCUCGa -3' miRNA: 3'- -CUUGUCCA-GGa-----CGUAGG------CGCUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 53793 | 0.66 | 0.887254 |
Target: 5'- nAGCAGGUCUgcGCgGUCCGCcgaGAGCCg- -3' miRNA: 3'- cUUGUCCAGGa-CG-UAGGCG---CUCGGgu -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 53770 | 0.71 | 0.641618 |
Target: 5'- --uCAGG-CUggaGgAUCCGCGAGCCCAg -3' miRNA: 3'- cuuGUCCaGGa--CgUAGGCGCUCGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 43090 | 0.77 | 0.33662 |
Target: 5'- cGGAC-GGUCCggGCAUCCGCGA-CCCGg -3' miRNA: 3'- -CUUGuCCAGGa-CGUAGGCGCUcGGGU- -5' |
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16112 | 3' | -58.1 | NC_004065.1 | + | 38784 | 0.66 | 0.900092 |
Target: 5'- cGGGCugacGGUCUgGCGcCCGCaGAGCCCc -3' miRNA: 3'- -CUUGu---CCAGGaCGUaGGCG-CUCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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