miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 3' -58.1 NC_004065.1 + 90236 0.66 0.89378
Target:  5'- cAAgAGGUCg-GCGUCgGCGAagGCCCGc -3'
miRNA:   3'- cUUgUCCAGgaCGUAGgCGCU--CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 228459 0.68 0.811175
Target:  5'- cGAACGGGaCC-GCGUugcucaUCGCGAGUCCGg -3'
miRNA:   3'- -CUUGUCCaGGaCGUA------GGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 133787 0.67 0.819582
Target:  5'- -uGCGGGUCUUGgAUCuCGCGGuGUCCu -3'
miRNA:   3'- cuUGUCCAGGACgUAG-GCGCU-CGGGu -5'
16112 3' -58.1 NC_004065.1 + 90646 0.66 0.866422
Target:  5'- uGAGCAGGgagUCCUGCG-CCGaCGgguugcuguuGGCCCc -3'
miRNA:   3'- -CUUGUCC---AGGACGUaGGC-GC----------UCGGGu -5'
16112 3' -58.1 NC_004065.1 + 66609 0.66 0.873571
Target:  5'- cGGACAGGaUCCgGag-CCGCGGGCUg- -3'
miRNA:   3'- -CUUGUCC-AGGaCguaGGCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 101124 0.66 0.873571
Target:  5'- -cGCGcGGUCUgcuUGCGgaaCCGCGAGCCg- -3'
miRNA:   3'- cuUGU-CCAGG---ACGUa--GGCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 121466 0.66 0.873571
Target:  5'- cGAcCAGGUCggucggcGCGUCCGCGGGCgUg -3'
miRNA:   3'- -CUuGUCCAGga-----CGUAGGCGCUCGgGu -5'
16112 3' -58.1 NC_004065.1 + 107742 0.66 0.883236
Target:  5'- cGAuCAGGUCCUGCAUggucacugagcuggCCGgCGGgggguuaggacgccGCCCGg -3'
miRNA:   3'- -CUuGUCCAGGACGUA--------------GGC-GCU--------------CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 199725 0.66 0.887254
Target:  5'- cGAAaAGGaUCCUGCccgacCCGCaGGCCCAc -3'
miRNA:   3'- -CUUgUCC-AGGACGua---GGCGcUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 120818 0.68 0.811175
Target:  5'- uGAACAGG-CCcGCGUaCGCG-GCCCu -3'
miRNA:   3'- -CUUGUCCaGGaCGUAgGCGCuCGGGu -5'
16112 3' -58.1 NC_004065.1 + 194272 0.68 0.811175
Target:  5'- cGACAGGgccacgccgUCCUGCAaCCGCGAucugGCgCCGa -3'
miRNA:   3'- cUUGUCC---------AGGACGUaGGCGCU----CG-GGU- -5'
16112 3' -58.1 NC_004065.1 + 149967 0.68 0.776102
Target:  5'- --uCAGGUCCUGCAggaaagacUCCacCGAGUCCu -3'
miRNA:   3'- cuuGUCCAGGACGU--------AGGc-GCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 43090 0.77 0.33662
Target:  5'- cGGAC-GGUCCggGCAUCCGCGA-CCCGg -3'
miRNA:   3'- -CUUGuCCAGGa-CGUAGGCGCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 21607 0.76 0.366901
Target:  5'- -uGCAGGUCCUGCAacucguagccgcUCUGgGAGgCCCAg -3'
miRNA:   3'- cuUGUCCAGGACGU------------AGGCgCUC-GGGU- -5'
16112 3' -58.1 NC_004065.1 + 87377 0.76 0.374758
Target:  5'- aGAGCAGGcCCUGCAUCCGCcGGUUg- -3'
miRNA:   3'- -CUUGUCCaGGACGUAGGCGcUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 100385 0.7 0.700692
Target:  5'- --uCAGGUCCUuggGCAgcagCCgGCGGGUCCAg -3'
miRNA:   3'- cuuGUCCAGGA---CGUa---GG-CGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 169390 0.69 0.720036
Target:  5'- -uGCcuGUCgCUGCAcaggUCCGCGAGCCUc -3'
miRNA:   3'- cuUGucCAG-GACGU----AGGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 162088 0.69 0.757808
Target:  5'- cGAACGGGUgCUcGUaccacGUCCGCGuGUCCGa -3'
miRNA:   3'- -CUUGUCCAgGA-CG-----UAGGCGCuCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 164174 0.69 0.757808
Target:  5'- cAugAGGUCCUuaAUugacUCGCGGGCCCu -3'
miRNA:   3'- cUugUCCAGGAcgUA----GGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 122229 0.69 0.767011
Target:  5'- cGAGCGGGccggcgggucguUCCUGUcgCCGCugcuGCCCGc -3'
miRNA:   3'- -CUUGUCC------------AGGACGuaGGCGcu--CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.