miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 3' -58.1 NC_004065.1 + 206379 0.75 0.407307
Target:  5'- uGAACGGGcUCCUGCGUCgGCccGAGgCCAg -3'
miRNA:   3'- -CUUGUCC-AGGACGUAGgCG--CUCgGGU- -5'
16112 3' -58.1 NC_004065.1 + 53793 0.66 0.887254
Target:  5'- nAGCAGGUCUgcGCgGUCCGCcgaGAGCCg- -3'
miRNA:   3'- cUUGUCCAGGa-CG-UAGGCG---CUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 96067 0.66 0.900092
Target:  5'- -uAUAGG-CUUGCccGUCCGCGGGUCUc -3'
miRNA:   3'- cuUGUCCaGGACG--UAGGCGCUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 153197 0.66 0.900092
Target:  5'- --cCAGGcCCUGUAcaUCGCGAGCgCCGc -3'
miRNA:   3'- cuuGUCCaGGACGUa-GGCGCUCG-GGU- -5'
16112 3' -58.1 NC_004065.1 + 53770 0.71 0.641618
Target:  5'- --uCAGG-CUggaGgAUCCGCGAGCCCAg -3'
miRNA:   3'- cuuGUCCaGGa--CgUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 109127 0.71 0.651526
Target:  5'- -uGCGGGUgCUGUcgCCGCGAgacgccGCCCu -3'
miRNA:   3'- cuUGUCCAgGACGuaGGCGCU------CGGGu -5'
16112 3' -58.1 NC_004065.1 + 136580 0.69 0.720036
Target:  5'- gGAGCuGGUCCUGCGgUCCGgGGaUCCGg -3'
miRNA:   3'- -CUUGuCCAGGACGU-AGGCgCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 111992 0.69 0.770661
Target:  5'- cGAGCAGGgccgCCUGauccUCCGUcgggaggaggacgagGAGCCCGa -3'
miRNA:   3'- -CUUGUCCa---GGACgu--AGGCG---------------CUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 223492 0.67 0.851538
Target:  5'- uGACGGGUC--GCAUCCGUuAGCCUu -3'
miRNA:   3'- cUUGUCCAGgaCGUAGGCGcUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 136673 0.67 0.851538
Target:  5'- cGGGCGGGUCUgGCcggCgGCGGGCCg- -3'
miRNA:   3'- -CUUGUCCAGGaCGua-GgCGCUCGGgu -5'
16112 3' -58.1 NC_004065.1 + 88466 0.67 0.843813
Target:  5'- -cGCAGGUCUUGCG--CGCGAcGCCgAa -3'
miRNA:   3'- cuUGUCCAGGACGUagGCGCU-CGGgU- -5'
16112 3' -58.1 NC_004065.1 + 143956 0.74 0.477408
Target:  5'- --uCAGGUUCgccGaCAUCCGCGAGCUCAa -3'
miRNA:   3'- cuuGUCCAGGa--C-GUAGGCGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 196123 0.67 0.859077
Target:  5'- cGGCGGGUacgGCAUCCGCGGuCUCAc -3'
miRNA:   3'- cUUGUCCAggaCGUAGGCGCUcGGGU- -5'
16112 3' -58.1 NC_004065.1 + 4890 0.73 0.533673
Target:  5'- gGAGgAGcGUCC-GCGUCC-CGAGCCCAu -3'
miRNA:   3'- -CUUgUC-CAGGaCGUAGGcGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 28808 0.68 0.785072
Target:  5'- -cGCGGGUCCUcugcacgcacGUcgCCGCGccGCCCGa -3'
miRNA:   3'- cuUGUCCAGGA----------CGuaGGCGCu-CGGGU- -5'
16112 3' -58.1 NC_004065.1 + 54142 0.66 0.866422
Target:  5'- gGAACAGGUgCCacaaccGCAUCCggaacaGUGAGCUCGa -3'
miRNA:   3'- -CUUGUCCA-GGa-----CGUAGG------CGCUCGGGU- -5'
16112 3' -58.1 NC_004065.1 + 208378 0.66 0.900092
Target:  5'- cGGACAGGUCUUGgacgugauUAUCgGCuGGGCCUc -3'
miRNA:   3'- -CUUGUCCAGGAC--------GUAGgCG-CUCGGGu -5'
16112 3' -58.1 NC_004065.1 + 162744 0.71 0.611882
Target:  5'- --cCAGGUCCUGCGucUCCGcCGuGCCg- -3'
miRNA:   3'- cuuGUCCAGGACGU--AGGC-GCuCGGgu -5'
16112 3' -58.1 NC_004065.1 + 136310 0.7 0.700692
Target:  5'- gGAGCuGGUCCUGgagGUCCGgUGAGCCgAg -3'
miRNA:   3'- -CUUGuCCAGGACg--UAGGC-GCUCGGgU- -5'
16112 3' -58.1 NC_004065.1 + 136414 0.67 0.851538
Target:  5'- gGAGCuGGUCCUGgGggcCCGgUGAGCCgAg -3'
miRNA:   3'- -CUUGuCCAGGACgUa--GGC-GCUCGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.