miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 148644 0.66 0.713255
Target:  5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3'
miRNA:   3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 126500 0.66 0.703932
Target:  5'- uGCAccCGCGUCGCca-UGCGCCGcGCGa -3'
miRNA:   3'- gCGU--GCGCGGCGuccACGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 71955 0.66 0.703932
Target:  5'- --gGCGaCGCCGCcGGUGgaGCCGgGCAg -3'
miRNA:   3'- gcgUGC-GCGGCGuCCACg-CGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 45805 0.66 0.703932
Target:  5'- gGCugGCGCCacacgccgcguGCGGGUGgGCa-UGUAu -3'
miRNA:   3'- gCGugCGCGG-----------CGUCCACgCGgcACGU- -5'
16112 5' -63.1 NC_004065.1 + 229940 0.66 0.703932
Target:  5'- uGCACuuuuuUGCCGCcgAGG-GCGCCGcgGCAc -3'
miRNA:   3'- gCGUGc----GCGGCG--UCCaCGCGGCa-CGU- -5'
16112 5' -63.1 NC_004065.1 + 113438 0.66 0.703932
Target:  5'- aGCgGCG-GCCGgGGGgccCGCCGUGCc -3'
miRNA:   3'- gCG-UGCgCGGCgUCCac-GCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 79626 0.66 0.703932
Target:  5'- gCGCGCGCggacGCUGCGGGcGUG-CGUGUc -3'
miRNA:   3'- -GCGUGCG----CGGCGUCCaCGCgGCACGu -5'
16112 5' -63.1 NC_004065.1 + 99588 0.66 0.694556
Target:  5'- aCGUagaucuGCGCGCaGUAGGUGaCGCCG-GUg -3'
miRNA:   3'- -GCG------UGCGCGgCGUCCAC-GCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 99497 0.66 0.685136
Target:  5'- gCGCAUGCGCgGUcGGUGa--UGUGCAa -3'
miRNA:   3'- -GCGUGCGCGgCGuCCACgcgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 129976 0.66 0.685136
Target:  5'- aGCGCGUguccgcagaacGCCGCGGGgGCGgCGgacgagGCGa -3'
miRNA:   3'- gCGUGCG-----------CGGCGUCCaCGCgGCa-----CGU- -5'
16112 5' -63.1 NC_004065.1 + 113304 0.66 0.685136
Target:  5'- aCGgGCGaCGCCGCucGcGCGCCGgacGCGg -3'
miRNA:   3'- -GCgUGC-GCGGCGucCaCGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 94374 0.66 0.682302
Target:  5'- aCGCGCGUuacgGCCGCGgcgagcugucggcuGGUgGCGCCGUa-- -3'
miRNA:   3'- -GCGUGCG----CGGCGU--------------CCA-CGCGGCAcgu -5'
16112 5' -63.1 NC_004065.1 + 152874 0.66 0.67473
Target:  5'- aGCA-GCcauuucuGCUGCGGGUcGCGCCGcagGCAg -3'
miRNA:   3'- gCGUgCG-------CGGCGUCCA-CGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 127585 0.66 0.67473
Target:  5'- gGCACGCcguucagGUCGCAGaGgggagGCGCCG-GCu -3'
miRNA:   3'- gCGUGCG-------CGGCGUC-Ca----CGCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 28540 0.66 0.663335
Target:  5'- aGCGCcCGCCGCAuGcUGCGCCGcacgauacacuucgUGCGc -3'
miRNA:   3'- gCGUGcGCGGCGUcC-ACGCGGC--------------ACGU- -5'
16112 5' -63.1 NC_004065.1 + 68634 0.67 0.656674
Target:  5'- aGCugGCGUCGCuGGcacagGCGgCCGagGCGu -3'
miRNA:   3'- gCGugCGCGGCGuCCa----CGC-GGCa-CGU- -5'
16112 5' -63.1 NC_004065.1 + 60978 0.67 0.647143
Target:  5'- uCGCGCGUacgGCCGCA---GCGCCuUGCAc -3'
miRNA:   3'- -GCGUGCG---CGGCGUccaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 70511 0.67 0.646189
Target:  5'- gGCgGCGCccuucucgacggaGCUGCAGGcGCGCC-UGCAg -3'
miRNA:   3'- gCG-UGCG-------------CGGCGUCCaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 132474 0.67 0.628056
Target:  5'- aGCACcCGCUGCAGcagGCGCUG-GCGc -3'
miRNA:   3'- gCGUGcGCGGCGUCca-CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 219253 0.67 0.628056
Target:  5'- aGCACGCGCCGCcGGUGUaaCucGCGa -3'
miRNA:   3'- gCGUGCGCGGCGuCCACGcgGcaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.