Results 41 - 60 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 209304 | 0.67 | 0.599463 |
Target: 5'- uCGCcguCGuCGCCGUcGGUGcCGUCGUGUg -3' miRNA: 3'- -GCGu--GC-GCGGCGuCCAC-GCGGCACGu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 60978 | 0.67 | 0.647143 |
Target: 5'- uCGCGCGUacgGCCGCA---GCGCCuUGCAc -3' miRNA: 3'- -GCGUGCG---CGGCGUccaCGCGGcACGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 68634 | 0.67 | 0.656674 |
Target: 5'- aGCugGCGUCGCuGGcacagGCGgCCGagGCGu -3' miRNA: 3'- gCGugCGCGGCGuCCa----CGC-GGCa-CGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 123668 | 0.67 | 0.608981 |
Target: 5'- uCGCACGUGgCGC-GcUGC-CCGUGCAg -3' miRNA: 3'- -GCGUGCGCgGCGuCcACGcGGCACGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 106674 | 0.67 | 0.608981 |
Target: 5'- aCGCACGgGCUGUAgaucuccgacGGUGCGCCucguUGUg -3' miRNA: 3'- -GCGUGCgCGGCGU----------CCACGCGGc---ACGu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 7403 | 0.67 | 0.618514 |
Target: 5'- gGC-CGacCGCCGCAGGUGCGaCG-GUAc -3' miRNA: 3'- gCGuGC--GCGGCGUCCACGCgGCaCGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 70511 | 0.67 | 0.646189 |
Target: 5'- gGCgGCGCccuucucgacggaGCUGCAGGcGCGCC-UGCAg -3' miRNA: 3'- gCG-UGCG-------------CGGCGUCCaCGCGGcACGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 127585 | 0.66 | 0.67473 |
Target: 5'- gGCACGCcguucagGUCGCAGaGgggagGCGCCG-GCu -3' miRNA: 3'- gCGUGCG-------CGGCGUC-Ca----CGCGGCaCGu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 152874 | 0.66 | 0.67473 |
Target: 5'- aGCA-GCcauuucuGCUGCGGGUcGCGCCGcagGCAg -3' miRNA: 3'- gCGUgCG-------CGGCGUCCA-CGCGGCa--CGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 94374 | 0.66 | 0.682302 |
Target: 5'- aCGCGCGUuacgGCCGCGgcgagcugucggcuGGUgGCGCCGUa-- -3' miRNA: 3'- -GCGUGCG----CGGCGU--------------CCA-CGCGGCAcgu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 129976 | 0.66 | 0.685136 |
Target: 5'- aGCGCGUguccgcagaacGCCGCGGGgGCGgCGgacgagGCGa -3' miRNA: 3'- gCGUGCG-----------CGGCGUCCaCGCgGCa-----CGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 99588 | 0.66 | 0.694556 |
Target: 5'- aCGUagaucuGCGCGCaGUAGGUGaCGCCG-GUg -3' miRNA: 3'- -GCG------UGCGCGgCGUCCAC-GCGGCaCGu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 113438 | 0.66 | 0.703932 |
Target: 5'- aGCgGCG-GCCGgGGGgccCGCCGUGCc -3' miRNA: 3'- gCG-UGCgCGGCgUCCac-GCGGCACGu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 148644 | 0.66 | 0.713255 |
Target: 5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3' miRNA: 3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 99497 | 0.66 | 0.685136 |
Target: 5'- gCGCAUGCGCgGUcGGUGa--UGUGCAa -3' miRNA: 3'- -GCGUGCGCGgCGuCCACgcgGCACGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 113304 | 0.66 | 0.685136 |
Target: 5'- aCGgGCGaCGCCGCucGcGCGCCGgacGCGg -3' miRNA: 3'- -GCgUGC-GCGGCGucCaCGCGGCa--CGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 229940 | 0.66 | 0.703932 |
Target: 5'- uGCACuuuuuUGCCGCcgAGG-GCGCCGcgGCAc -3' miRNA: 3'- gCGUGc----GCGGCG--UCCaCGCGGCa-CGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 45805 | 0.66 | 0.703932 |
Target: 5'- gGCugGCGCCacacgccgcguGCGGGUGgGCa-UGUAu -3' miRNA: 3'- gCGugCGCGG-----------CGUCCACgCGgcACGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 71955 | 0.66 | 0.703932 |
Target: 5'- --gGCGaCGCCGCcGGUGgaGCCGgGCAg -3' miRNA: 3'- gcgUGC-GCGGCGuCCACg-CGGCaCGU- -5' |
|||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 126500 | 0.66 | 0.703932 |
Target: 5'- uGCAccCGCGUCGCca-UGCGCCGcGCGa -3' miRNA: 3'- gCGU--GCGCGGCGuccACGCGGCaCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home