Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 148644 | 0.66 | 0.713255 |
Target: 5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3' miRNA: 3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 126500 | 0.66 | 0.703932 |
Target: 5'- uGCAccCGCGUCGCca-UGCGCCGcGCGa -3' miRNA: 3'- gCGU--GCGCGGCGuccACGCGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 71955 | 0.66 | 0.703932 |
Target: 5'- --gGCGaCGCCGCcGGUGgaGCCGgGCAg -3' miRNA: 3'- gcgUGC-GCGGCGuCCACg-CGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 45805 | 0.66 | 0.703932 |
Target: 5'- gGCugGCGCCacacgccgcguGCGGGUGgGCa-UGUAu -3' miRNA: 3'- gCGugCGCGG-----------CGUCCACgCGgcACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 229940 | 0.66 | 0.703932 |
Target: 5'- uGCACuuuuuUGCCGCcgAGG-GCGCCGcgGCAc -3' miRNA: 3'- gCGUGc----GCGGCG--UCCaCGCGGCa-CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 113438 | 0.66 | 0.703932 |
Target: 5'- aGCgGCG-GCCGgGGGgccCGCCGUGCc -3' miRNA: 3'- gCG-UGCgCGGCgUCCac-GCGGCACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 79626 | 0.66 | 0.703932 |
Target: 5'- gCGCGCGCggacGCUGCGGGcGUG-CGUGUc -3' miRNA: 3'- -GCGUGCG----CGGCGUCCaCGCgGCACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 99588 | 0.66 | 0.694556 |
Target: 5'- aCGUagaucuGCGCGCaGUAGGUGaCGCCG-GUg -3' miRNA: 3'- -GCG------UGCGCGgCGUCCAC-GCGGCaCGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 99497 | 0.66 | 0.685136 |
Target: 5'- gCGCAUGCGCgGUcGGUGa--UGUGCAa -3' miRNA: 3'- -GCGUGCGCGgCGuCCACgcgGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 129976 | 0.66 | 0.685136 |
Target: 5'- aGCGCGUguccgcagaacGCCGCGGGgGCGgCGgacgagGCGa -3' miRNA: 3'- gCGUGCG-----------CGGCGUCCaCGCgGCa-----CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 113304 | 0.66 | 0.685136 |
Target: 5'- aCGgGCGaCGCCGCucGcGCGCCGgacGCGg -3' miRNA: 3'- -GCgUGC-GCGGCGucCaCGCGGCa--CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 94374 | 0.66 | 0.682302 |
Target: 5'- aCGCGCGUuacgGCCGCGgcgagcugucggcuGGUgGCGCCGUa-- -3' miRNA: 3'- -GCGUGCG----CGGCGU--------------CCA-CGCGGCAcgu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 152874 | 0.66 | 0.67473 |
Target: 5'- aGCA-GCcauuucuGCUGCGGGUcGCGCCGcagGCAg -3' miRNA: 3'- gCGUgCG-------CGGCGUCCA-CGCGGCa--CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 127585 | 0.66 | 0.67473 |
Target: 5'- gGCACGCcguucagGUCGCAGaGgggagGCGCCG-GCu -3' miRNA: 3'- gCGUGCG-------CGGCGUC-Ca----CGCGGCaCGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 28540 | 0.66 | 0.663335 |
Target: 5'- aGCGCcCGCCGCAuGcUGCGCCGcacgauacacuucgUGCGc -3' miRNA: 3'- gCGUGcGCGGCGUcC-ACGCGGC--------------ACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 68634 | 0.67 | 0.656674 |
Target: 5'- aGCugGCGUCGCuGGcacagGCGgCCGagGCGu -3' miRNA: 3'- gCGugCGCGGCGuCCa----CGC-GGCa-CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 60978 | 0.67 | 0.647143 |
Target: 5'- uCGCGCGUacgGCCGCA---GCGCCuUGCAc -3' miRNA: 3'- -GCGUGCG---CGGCGUccaCGCGGcACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 70511 | 0.67 | 0.646189 |
Target: 5'- gGCgGCGCccuucucgacggaGCUGCAGGcGCGCC-UGCAg -3' miRNA: 3'- gCG-UGCG-------------CGGCGUCCaCGCGGcACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 132474 | 0.67 | 0.628056 |
Target: 5'- aGCACcCGCUGCAGcagGCGCUG-GCGc -3' miRNA: 3'- gCGUGcGCGGCGUCca-CGCGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 219253 | 0.67 | 0.628056 |
Target: 5'- aGCACGCGCCGCcGGUGUaaCucGCGa -3' miRNA: 3'- gCGUGCGCGGCGuCCACGcgGcaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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