miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 7403 0.67 0.618514
Target:  5'- gGC-CGacCGCCGCAGGUGCGaCG-GUAc -3'
miRNA:   3'- gCGuGC--GCGGCGUCCACGCgGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 31521 0.67 0.618514
Target:  5'- uGCgACGUGCCGCGGG-GCuaccCCG-GCAu -3'
miRNA:   3'- gCG-UGCGCGGCGUCCaCGc---GGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 165494 0.67 0.608981
Target:  5'- uCGCcguCGCGCCGCAGcugcUGCGUgGUGa- -3'
miRNA:   3'- -GCGu--GCGCGGCGUCc---ACGCGgCACgu -5'
16112 5' -63.1 NC_004065.1 + 123668 0.67 0.608981
Target:  5'- uCGCACGUGgCGC-GcUGC-CCGUGCAg -3'
miRNA:   3'- -GCGUGCGCgGCGuCcACGcGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 106674 0.67 0.608981
Target:  5'- aCGCACGgGCUGUAgaucuccgacGGUGCGCCucguUGUg -3'
miRNA:   3'- -GCGUGCgCGGCGU----------CCACGCGGc---ACGu -5'
16112 5' -63.1 NC_004065.1 + 209304 0.67 0.599463
Target:  5'- uCGCcguCGuCGCCGUcGGUGcCGUCGUGUg -3'
miRNA:   3'- -GCGu--GC-GCGGCGuCCAC-GCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 129447 0.68 0.589966
Target:  5'- gGUACGUGCCGCGGGcgGaaaaaaGCCGcaaGCGc -3'
miRNA:   3'- gCGUGCGCGGCGUCCa-Cg-----CGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 114973 0.68 0.589966
Target:  5'- uCGCGCGCGCCGUugcccucGGcccugGCGgCCGcGCGg -3'
miRNA:   3'- -GCGUGCGCGGCGu------CCa----CGC-GGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 38617 0.68 0.589966
Target:  5'- uCGCGCGCGaCCuucauacucacgGCgaGGGUGCGCCGaGUc -3'
miRNA:   3'- -GCGUGCGC-GG------------CG--UCCACGCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 183889 0.68 0.589966
Target:  5'- uGCGCGUaCCGUugaugAGGUGCGCCacgcugaugGUGUAa -3'
miRNA:   3'- gCGUGCGcGGCG-----UCCACGCGG---------CACGU- -5'
16112 5' -63.1 NC_004065.1 + 125430 0.68 0.58428
Target:  5'- gGCGCcaGCGCCucggGCAGGUuacccaccaugaugcGCGgCGUGCAc -3'
miRNA:   3'- gCGUG--CGCGG----CGUCCA---------------CGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 91175 0.68 0.561656
Target:  5'- uCGCAgGCgacgGCCGCGGaaGCGCCGUcgGCGu -3'
miRNA:   3'- -GCGUgCG----CGGCGUCcaCGCGGCA--CGU- -5'
16112 5' -63.1 NC_004065.1 + 69394 0.68 0.561656
Target:  5'- gCGCugGCggaacagcuGCCGaCGGG-GCGCCagGUGCGc -3'
miRNA:   3'- -GCGugCG---------CGGC-GUCCaCGCGG--CACGU- -5'
16112 5' -63.1 NC_004065.1 + 125640 0.68 0.561656
Target:  5'- uGCACGagcCGCCGCguGGcGUGUGCCauGUGCu -3'
miRNA:   3'- gCGUGC---GCGGCG--UC-CACGCGG--CACGu -5'
16112 5' -63.1 NC_004065.1 + 198642 0.68 0.556036
Target:  5'- --uGCGCGCCacCAGGUGCagcgugucguccgacGCCGUGUAc -3'
miRNA:   3'- gcgUGCGCGGc-GUCCACG---------------CGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 150398 0.68 0.552298
Target:  5'- aCGCACGC-CCGCAGcGUcCGCgCGcGCAg -3'
miRNA:   3'- -GCGUGCGcGGCGUC-CAcGCG-GCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 188898 0.68 0.552298
Target:  5'- gGCAUaCGCgGCAGGUGCGCgG-GUc -3'
miRNA:   3'- gCGUGcGCGgCGUCCACGCGgCaCGu -5'
16112 5' -63.1 NC_004065.1 + 132773 0.69 0.524527
Target:  5'- gGCGCGaagGUCGcCAGaaGCGCCGUGCGc -3'
miRNA:   3'- gCGUGCg--CGGC-GUCcaCGCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 96853 0.69 0.514476
Target:  5'- gGCGCGCugucGCCGCGGGcGCcguucugGCCGUGg- -3'
miRNA:   3'- gCGUGCG----CGGCGUCCaCG-------CGGCACgu -5'
16112 5' -63.1 NC_004065.1 + 33466 0.69 0.505407
Target:  5'- gGCACGCguucgcgGCCGUGGGcgccuacGCGCCG-GCAg -3'
miRNA:   3'- gCGUGCG-------CGGCGUCCa------CGCGGCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.