miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 7403 0.67 0.618514
Target:  5'- gGC-CGacCGCCGCAGGUGCGaCG-GUAc -3'
miRNA:   3'- gCGuGC--GCGGCGUCCACGCgGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 27545 0.7 0.428134
Target:  5'- uCGCACGCGCCGCAGGU-CGacaucauaaacaCC-UGCu -3'
miRNA:   3'- -GCGUGCGCGGCGUCCAcGC------------GGcACGu -5'
16112 5' -63.1 NC_004065.1 + 28540 0.66 0.663335
Target:  5'- aGCGCcCGCCGCAuGcUGCGCCGcacgauacacuucgUGCGc -3'
miRNA:   3'- gCGUGcGCGGCGUcC-ACGCGGC--------------ACGU- -5'
16112 5' -63.1 NC_004065.1 + 28848 0.71 0.41989
Target:  5'- gGgACGCGCCGCuuGGUgucgGCGCUGcUGCGu -3'
miRNA:   3'- gCgUGCGCGGCGu-CCA----CGCGGC-ACGU- -5'
16112 5' -63.1 NC_004065.1 + 31521 0.67 0.618514
Target:  5'- uGCgACGUGCCGCGGG-GCuaccCCG-GCAu -3'
miRNA:   3'- gCG-UGCGCGGCGUCCaCGc---GGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 33466 0.69 0.505407
Target:  5'- gGCACGCguucgcgGCCGUGGGcgccuacGCGCCG-GCAg -3'
miRNA:   3'- gCGUGCG-------CGGCGUCCa------CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 35464 0.7 0.470735
Target:  5'- aGUcgACGCGCUGCGcGGUGC-CCGUGaCGa -3'
miRNA:   3'- gCG--UGCGCGGCGU-CCACGcGGCAC-GU- -5'
16112 5' -63.1 NC_004065.1 + 35938 0.71 0.411742
Target:  5'- uGCucuguCGCgGCCGCAGGUcgucggacucGCGCCGcUGCu -3'
miRNA:   3'- gCGu----GCG-CGGCGUCCA----------CGCGGC-ACGu -5'
16112 5' -63.1 NC_004065.1 + 38617 0.68 0.589966
Target:  5'- uCGCGCGCGaCCuucauacucacgGCgaGGGUGCGCCGaGUc -3'
miRNA:   3'- -GCGUGCGC-GG------------CG--UCCACGCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 45805 0.66 0.703932
Target:  5'- gGCugGCGCCacacgccgcguGCGGGUGgGCa-UGUAu -3'
miRNA:   3'- gCGugCGCGG-----------CGUCCACgCGgcACGU- -5'
16112 5' -63.1 NC_004065.1 + 51107 0.7 0.436474
Target:  5'- aCGCACGaCGCCGUuc-UGCGCCGauUGCu -3'
miRNA:   3'- -GCGUGC-GCGGCGuccACGCGGC--ACGu -5'
16112 5' -63.1 NC_004065.1 + 59325 0.73 0.315233
Target:  5'- gGCAauCGCGCCGC-GG-GCGgCGUGCGa -3'
miRNA:   3'- gCGU--GCGCGGCGuCCaCGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 60978 0.67 0.647143
Target:  5'- uCGCGCGUacgGCCGCA---GCGCCuUGCAc -3'
miRNA:   3'- -GCGUGCG---CGGCGUccaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 66102 0.7 0.439835
Target:  5'- uGCACGCGCUGgGGGgcgacaucaccgagGCGCUG-GCGc -3'
miRNA:   3'- gCGUGCGCGGCgUCCa-------------CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 68634 0.67 0.656674
Target:  5'- aGCugGCGUCGCuGGcacagGCGgCCGagGCGu -3'
miRNA:   3'- gCGugCGCGGCGuCCa----CGC-GGCa-CGU- -5'
16112 5' -63.1 NC_004065.1 + 69394 0.68 0.561656
Target:  5'- gCGCugGCggaacagcuGCCGaCGGG-GCGCCagGUGCGc -3'
miRNA:   3'- -GCGugCG---------CGGC-GUCCaCGCGG--CACGU- -5'
16112 5' -63.1 NC_004065.1 + 70511 0.67 0.646189
Target:  5'- gGCgGCGCccuucucgacggaGCUGCAGGcGCGCC-UGCAg -3'
miRNA:   3'- gCG-UGCG-------------CGGCGUCCaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 71955 0.66 0.703932
Target:  5'- --gGCGaCGCCGCcGGUGgaGCCGgGCAg -3'
miRNA:   3'- gcgUGC-GCGGCGuCCACg-CGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 79626 0.66 0.703932
Target:  5'- gCGCGCGCggacGCUGCGGGcGUG-CGUGUc -3'
miRNA:   3'- -GCGUGCG----CGGCGUCCaCGCgGCACGu -5'
16112 5' -63.1 NC_004065.1 + 90375 0.71 0.41989
Target:  5'- cCGCACGCGCCGCAcagcuuGGa--GCCG-GCGu -3'
miRNA:   3'- -GCGUGCGCGGCGU------CCacgCGGCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.