miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 91175 0.68 0.561656
Target:  5'- uCGCAgGCgacgGCCGCGGaaGCGCCGUcgGCGu -3'
miRNA:   3'- -GCGUgCG----CGGCGUCcaCGCGGCA--CGU- -5'
16112 5' -63.1 NC_004065.1 + 94374 0.66 0.682302
Target:  5'- aCGCGCGUuacgGCCGCGgcgagcugucggcuGGUgGCGCCGUa-- -3'
miRNA:   3'- -GCGUGCG----CGGCGU--------------CCA-CGCGGCAcgu -5'
16112 5' -63.1 NC_004065.1 + 96853 0.69 0.514476
Target:  5'- gGCGCGCugucGCCGCGGGcGCcguucugGCCGUGg- -3'
miRNA:   3'- gCGUGCG----CGGCGUCCaCG-------CGGCACgu -5'
16112 5' -63.1 NC_004065.1 + 99497 0.66 0.685136
Target:  5'- gCGCAUGCGCgGUcGGUGa--UGUGCAa -3'
miRNA:   3'- -GCGUGCGCGgCGuCCACgcgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 99588 0.66 0.694556
Target:  5'- aCGUagaucuGCGCGCaGUAGGUGaCGCCG-GUg -3'
miRNA:   3'- -GCG------UGCGCGgCGUCCAC-GCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 103634 0.71 0.410933
Target:  5'- aCGCGCugauucuGCGCgaGCAGGcgGuCGCCGUGCGc -3'
miRNA:   3'- -GCGUG-------CGCGg-CGUCCa-C-GCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 104671 0.72 0.372514
Target:  5'- uGCGCGCGCCGgAGGgucacgagGCGaCGcUGCAg -3'
miRNA:   3'- gCGUGCGCGGCgUCCa-------CGCgGC-ACGU- -5'
16112 5' -63.1 NC_004065.1 + 106674 0.67 0.608981
Target:  5'- aCGCACGgGCUGUAgaucuccgacGGUGCGCCucguUGUg -3'
miRNA:   3'- -GCGUGCgCGGCGU----------CCACGCGGc---ACGu -5'
16112 5' -63.1 NC_004065.1 + 108648 0.69 0.497304
Target:  5'- uCGUguucuGCGUGCCGCuGGcGC-CCGUGCGg -3'
miRNA:   3'- -GCG-----UGCGCGGCGuCCaCGcGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 113304 0.66 0.685136
Target:  5'- aCGgGCGaCGCCGCucGcGCGCCGgacGCGg -3'
miRNA:   3'- -GCgUGC-GCGGCGucCaCGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 113438 0.66 0.703932
Target:  5'- aGCgGCG-GCCGgGGGgccCGCCGUGCc -3'
miRNA:   3'- gCG-UGCgCGGCgUCCac-GCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 114973 0.68 0.589966
Target:  5'- uCGCGCGCGCCGUugcccucGGcccugGCGgCCGcGCGg -3'
miRNA:   3'- -GCGUGCGCGGCGu------CCa----CGC-GGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 123668 0.67 0.608981
Target:  5'- uCGCACGUGgCGC-GcUGC-CCGUGCAg -3'
miRNA:   3'- -GCGUGCGCgGCGuCcACGcGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 123876 1.07 0.001323
Target:  5'- cCGCACGCGCCGCAGGUGCGCCGUGCAc -3'
miRNA:   3'- -GCGUGCGCGGCGUCCACGCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 125430 0.68 0.58428
Target:  5'- gGCGCcaGCGCCucggGCAGGUuacccaccaugaugcGCGgCGUGCAc -3'
miRNA:   3'- gCGUG--CGCGG----CGUCCA---------------CGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 125640 0.68 0.561656
Target:  5'- uGCACGagcCGCCGCguGGcGUGUGCCauGUGCu -3'
miRNA:   3'- gCGUGC---GCGGCG--UC-CACGCGG--CACGu -5'
16112 5' -63.1 NC_004065.1 + 126500 0.66 0.703932
Target:  5'- uGCAccCGCGUCGCca-UGCGCCGcGCGa -3'
miRNA:   3'- gCGU--GCGCGGCGuccACGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 127585 0.66 0.67473
Target:  5'- gGCACGCcguucagGUCGCAGaGgggagGCGCCG-GCu -3'
miRNA:   3'- gCGUGCG-------CGGCGUC-Ca----CGCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 129447 0.68 0.589966
Target:  5'- gGUACGUGCCGCGGGcgGaaaaaaGCCGcaaGCGc -3'
miRNA:   3'- gCGUGCGCGGCGUCCa-Cg-----CGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 129976 0.66 0.685136
Target:  5'- aGCGCGUguccgcagaacGCCGCGGGgGCGgCGgacgagGCGa -3'
miRNA:   3'- gCGUGCG-----------CGGCGUCCaCGCgGCa-----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.