miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 229940 0.66 0.703932
Target:  5'- uGCACuuuuuUGCCGCcgAGG-GCGCCGcgGCAc -3'
miRNA:   3'- gCGUGc----GCGGCG--UCCaCGCGGCa-CGU- -5'
16112 5' -63.1 NC_004065.1 + 219253 0.67 0.628056
Target:  5'- aGCACGCGCCGCcGGUGUaaCucGCGa -3'
miRNA:   3'- gCGUGCGCGGCGuCCACGcgGcaCGU- -5'
16112 5' -63.1 NC_004065.1 + 209304 0.67 0.599463
Target:  5'- uCGCcguCGuCGCCGUcGGUGcCGUCGUGUg -3'
miRNA:   3'- -GCGu--GC-GCGGCGuCCAC-GCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 198642 0.68 0.556036
Target:  5'- --uGCGCGCCacCAGGUGCagcgugucguccgacGCCGUGUAc -3'
miRNA:   3'- gcgUGCGCGGc-GUCCACG---------------CGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 195566 0.75 0.231517
Target:  5'- cCGCcauCGCGCCGCAGGauucGCgucccccgGCCGUGCGa -3'
miRNA:   3'- -GCGu--GCGCGGCGUCCa---CG--------CGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 188898 0.68 0.552298
Target:  5'- gGCAUaCGCgGCAGGUGCGCgG-GUc -3'
miRNA:   3'- gCGUGcGCGgCGUCCACGCGgCaCGu -5'
16112 5' -63.1 NC_004065.1 + 187395 0.7 0.428134
Target:  5'- gGCGCGCGgCGCGGuGUgGCGUCGaggGCGa -3'
miRNA:   3'- gCGUGCGCgGCGUC-CA-CGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 183889 0.68 0.589966
Target:  5'- uGCGCGUaCCGUugaugAGGUGCGCCacgcugaugGUGUAa -3'
miRNA:   3'- gCGUGCGcGGCG-----UCCACGCGG---------CACGU- -5'
16112 5' -63.1 NC_004065.1 + 178900 0.72 0.360509
Target:  5'- cCGCuACGUGCCGCAGcaaucggcgcagaacG-GCGUCGUGCGu -3'
miRNA:   3'- -GCG-UGCGCGGCGUC---------------CaCGCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 168629 0.73 0.301994
Target:  5'- gCGCugGUGCCGCGGGcgGaGCCG-GCGc -3'
miRNA:   3'- -GCGugCGCGGCGUCCa-CgCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 165494 0.67 0.608981
Target:  5'- uCGCcguCGCGCCGCAGcugcUGCGUgGUGa- -3'
miRNA:   3'- -GCGu--GCGCGGCGUCc---ACGCGgCACgu -5'
16112 5' -63.1 NC_004065.1 + 163426 0.71 0.411742
Target:  5'- gGCAa-CGCCGC-GGUGgccgcCGCCGUGCAg -3'
miRNA:   3'- gCGUgcGCGGCGuCCAC-----GCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 159486 0.72 0.35755
Target:  5'- uCGUucucuCGCGCCuGCAGGcGCGCC-UGCAg -3'
miRNA:   3'- -GCGu----GCGCGG-CGUCCaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 157745 0.73 0.295537
Target:  5'- uGCuCGCGUCGCgguuccucGGGUGCGaCGUGCAg -3'
miRNA:   3'- gCGuGCGCGGCG--------UCCACGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 152874 0.66 0.67473
Target:  5'- aGCA-GCcauuucuGCUGCGGGUcGCGCCGcagGCAg -3'
miRNA:   3'- gCGUgCG-------CGGCGUCCA-CGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 150398 0.68 0.552298
Target:  5'- aCGCACGC-CCGCAGcGUcCGCgCGcGCAg -3'
miRNA:   3'- -GCGUGCGcGGCGUC-CAcGCG-GCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 149658 0.74 0.264861
Target:  5'- uGCACGCGCCGCAGc-GCGuugaCCGUGUc -3'
miRNA:   3'- gCGUGCGCGGCGUCcaCGC----GGCACGu -5'
16112 5' -63.1 NC_004065.1 + 148644 0.66 0.713255
Target:  5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3'
miRNA:   3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 143114 0.77 0.163423
Target:  5'- aCGCGCGCGCCGCcgAGGgcgagaccgGCGCCGcgaccUGCGu -3'
miRNA:   3'- -GCGUGCGCGGCG--UCCa--------CGCGGC-----ACGU- -5'
16112 5' -63.1 NC_004065.1 + 132773 0.69 0.524527
Target:  5'- gGCGCGaagGUCGcCAGaaGCGCCGUGCGc -3'
miRNA:   3'- gCGUGCg--CGGC-GUCcaCGCGGCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.