Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 143114 | 0.77 | 0.163423 |
Target: 5'- aCGCGCGCGCCGCcgAGGgcgagaccgGCGCCGcgaccUGCGu -3' miRNA: 3'- -GCGUGCGCGGCG--UCCa--------CGCGGC-----ACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 195566 | 0.75 | 0.231517 |
Target: 5'- cCGCcauCGCGCCGCAGGauucGCgucccccgGCCGUGCGa -3' miRNA: 3'- -GCGu--GCGCGGCGUCCa---CG--------CGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 149658 | 0.74 | 0.264861 |
Target: 5'- uGCACGCGCCGCAGc-GCGuugaCCGUGUc -3' miRNA: 3'- gCGUGCGCGGCGUCcaCGC----GGCACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 168629 | 0.73 | 0.301994 |
Target: 5'- gCGCugGUGCCGCGGGcgGaGCCG-GCGc -3' miRNA: 3'- -GCGugCGCGGCGUCCa-CgCGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 103634 | 0.71 | 0.410933 |
Target: 5'- aCGCGCugauucuGCGCgaGCAGGcgGuCGCCGUGCGc -3' miRNA: 3'- -GCGUG-------CGCGg-CGUCCa-C-GCGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 35938 | 0.71 | 0.411742 |
Target: 5'- uGCucuguCGCgGCCGCAGGUcgucggacucGCGCCGcUGCu -3' miRNA: 3'- gCGu----GCG-CGGCGUCCA----------CGCGGC-ACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 163426 | 0.71 | 0.411742 |
Target: 5'- gGCAa-CGCCGC-GGUGgccgcCGCCGUGCAg -3' miRNA: 3'- gCGUgcGCGGCGuCCAC-----GCGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 90375 | 0.71 | 0.41989 |
Target: 5'- cCGCACGCGCCGCAcagcuuGGa--GCCG-GCGu -3' miRNA: 3'- -GCGUGCGCGGCGU------CCacgCGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 188898 | 0.68 | 0.552298 |
Target: 5'- gGCAUaCGCgGCAGGUGCGCgG-GUc -3' miRNA: 3'- gCGUGcGCGgCGUCCACGCGgCaCGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 150398 | 0.68 | 0.552298 |
Target: 5'- aCGCACGC-CCGCAGcGUcCGCgCGcGCAg -3' miRNA: 3'- -GCGUGCGcGGCGUC-CAcGCG-GCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 96853 | 0.69 | 0.514476 |
Target: 5'- gGCGCGCugucGCCGCGGGcGCcguucugGCCGUGg- -3' miRNA: 3'- gCGUGCG----CGGCGUCCaCG-------CGGCACgu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 35464 | 0.7 | 0.470735 |
Target: 5'- aGUcgACGCGCUGCGcGGUGC-CCGUGaCGa -3' miRNA: 3'- gCG--UGCGCGGCGU-CCACGcGGCAC-GU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 66102 | 0.7 | 0.439835 |
Target: 5'- uGCACGCGCUGgGGGgcgacaucaccgagGCGCUG-GCGc -3' miRNA: 3'- gCGUGCGCGGCgUCCa-------------CGCGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 51107 | 0.7 | 0.436474 |
Target: 5'- aCGCACGaCGCCGUuc-UGCGCCGauUGCu -3' miRNA: 3'- -GCGUGC-GCGGCGuccACGCGGC--ACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 27545 | 0.7 | 0.428134 |
Target: 5'- uCGCACGCGCCGCAGGU-CGacaucauaaacaCC-UGCu -3' miRNA: 3'- -GCGUGCGCGGCGUCCAcGC------------GGcACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 148644 | 0.66 | 0.713255 |
Target: 5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3' miRNA: 3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 59325 | 0.73 | 0.315233 |
Target: 5'- gGCAauCGCGCCGC-GG-GCGgCGUGCGa -3' miRNA: 3'- gCGU--GCGCGGCGuCCaCGCgGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 159486 | 0.72 | 0.35755 |
Target: 5'- uCGUucucuCGCGCCuGCAGGcGCGCC-UGCAg -3' miRNA: 3'- -GCGu----GCGCGG-CGUCCaCGCGGcACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 178900 | 0.72 | 0.360509 |
Target: 5'- cCGCuACGUGCCGCAGcaaucggcgcagaacG-GCGUCGUGCGu -3' miRNA: 3'- -GCG-UGCGCGGCGUC---------------CaCGCGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 104671 | 0.72 | 0.372514 |
Target: 5'- uGCGCGCGCCGgAGGgucacgagGCGaCGcUGCAg -3' miRNA: 3'- gCGUGCGCGGCgUCCa-------CGCgGC-ACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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