Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16112 | 5' | -63.1 | NC_004065.1 | + | 219253 | 0.67 | 0.628056 |
Target: 5'- aGCACGCGCCGCcGGUGUaaCucGCGa -3' miRNA: 3'- gCGUGCGCGGCGuCCACGcgGcaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 152874 | 0.66 | 0.67473 |
Target: 5'- aGCA-GCcauuucuGCUGCGGGUcGCGCCGcagGCAg -3' miRNA: 3'- gCGUgCG-------CGGCGUCCA-CGCGGCa--CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 127585 | 0.66 | 0.67473 |
Target: 5'- gGCACGCcguucagGUCGCAGaGgggagGCGCCG-GCu -3' miRNA: 3'- gCGUGCG-------CGGCGUC-Ca----CGCGGCaCGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 94374 | 0.66 | 0.682302 |
Target: 5'- aCGCGCGUuacgGCCGCGgcgagcugucggcuGGUgGCGCCGUa-- -3' miRNA: 3'- -GCGUGCG----CGGCGU--------------CCA-CGCGGCAcgu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 129976 | 0.66 | 0.685136 |
Target: 5'- aGCGCGUguccgcagaacGCCGCGGGgGCGgCGgacgagGCGa -3' miRNA: 3'- gCGUGCG-----------CGGCGUCCaCGCgGCa-----CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 99588 | 0.66 | 0.694556 |
Target: 5'- aCGUagaucuGCGCGCaGUAGGUGaCGCCG-GUg -3' miRNA: 3'- -GCG------UGCGCGgCGUCCAC-GCGGCaCGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 79626 | 0.66 | 0.703932 |
Target: 5'- gCGCGCGCggacGCUGCGGGcGUG-CGUGUc -3' miRNA: 3'- -GCGUGCG----CGGCGUCCaCGCgGCACGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 38617 | 0.68 | 0.589966 |
Target: 5'- uCGCGCGCGaCCuucauacucacgGCgaGGGUGCGCCGaGUc -3' miRNA: 3'- -GCGUGCGC-GG------------CG--UCCACGCGGCaCGu -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 183889 | 0.68 | 0.589966 |
Target: 5'- uGCGCGUaCCGUugaugAGGUGCGCCacgcugaugGUGUAa -3' miRNA: 3'- gCGUGCGcGGCG-----UCCACGCGG---------CACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 59325 | 0.73 | 0.315233 |
Target: 5'- gGCAauCGCGCCGC-GG-GCGgCGUGCGa -3' miRNA: 3'- gCGU--GCGCGGCGuCCaCGCgGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 159486 | 0.72 | 0.35755 |
Target: 5'- uCGUucucuCGCGCCuGCAGGcGCGCC-UGCAg -3' miRNA: 3'- -GCGu----GCGCGG-CGUCCaCGCGGcACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 178900 | 0.72 | 0.360509 |
Target: 5'- cCGCuACGUGCCGCAGcaaucggcgcagaacG-GCGUCGUGCGu -3' miRNA: 3'- -GCG-UGCGCGGCGUC---------------CaCGCGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 104671 | 0.72 | 0.372514 |
Target: 5'- uGCGCGCGCCGgAGGgucacgagGCGaCGcUGCAg -3' miRNA: 3'- gCGUGCGCGGCgUCCa-------CGCgGC-ACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 28848 | 0.71 | 0.41989 |
Target: 5'- gGgACGCGCCGCuuGGUgucgGCGCUGcUGCGu -3' miRNA: 3'- gCgUGCGCGGCGu-CCA----CGCGGC-ACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 187395 | 0.7 | 0.428134 |
Target: 5'- gGCGCGCGgCGCGGuGUgGCGUCGaggGCGa -3' miRNA: 3'- gCGUGCGCgGCGUC-CA-CGCGGCa--CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 131764 | 0.7 | 0.465507 |
Target: 5'- gGCGCGCGCC-CAGG-GCcGCCGUcccgagccgucgucgGCAc -3' miRNA: 3'- gCGUGCGCGGcGUCCaCG-CGGCA---------------CGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 108648 | 0.69 | 0.497304 |
Target: 5'- uCGUguucuGCGUGCCGCuGGcGC-CCGUGCGg -3' miRNA: 3'- -GCG-----UGCGCGGCGuCCaCGcGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 33466 | 0.69 | 0.505407 |
Target: 5'- gGCACGCguucgcgGCCGUGGGcgccuacGCGCCG-GCAg -3' miRNA: 3'- gCGUGCG-------CGGCGUCCa------CGCGGCaCGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 132773 | 0.69 | 0.524527 |
Target: 5'- gGCGCGaagGUCGcCAGaaGCGCCGUGCGc -3' miRNA: 3'- gCGUGCg--CGGC-GUCcaCGCGGCACGU- -5' |
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16112 | 5' | -63.1 | NC_004065.1 | + | 129447 | 0.68 | 0.589966 |
Target: 5'- gGUACGUGCCGCGGGcgGaaaaaaGCCGcaaGCGc -3' miRNA: 3'- gCGUGCGCGGCGUCCa-Cg-----CGGCa--CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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