miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 157745 0.73 0.295537
Target:  5'- uGCuCGCGUCGCgguuccucGGGUGCGaCGUGCAg -3'
miRNA:   3'- gCGuGCGCGGCG--------UCCACGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 31521 0.67 0.618514
Target:  5'- uGCgACGUGCCGCGGG-GCuaccCCG-GCAu -3'
miRNA:   3'- gCG-UGCGCGGCGUCCaCGc---GGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 219253 0.67 0.628056
Target:  5'- aGCACGCGCCGCcGGUGUaaCucGCGa -3'
miRNA:   3'- gCGUGCGCGGCGuCCACGcgGcaCGU- -5'
16112 5' -63.1 NC_004065.1 + 148644 0.66 0.713255
Target:  5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3'
miRNA:   3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 104671 0.72 0.372514
Target:  5'- uGCGCGCGCCGgAGGgucacgagGCGaCGcUGCAg -3'
miRNA:   3'- gCGUGCGCGGCgUCCa-------CGCgGC-ACGU- -5'
16112 5' -63.1 NC_004065.1 + 28848 0.71 0.41989
Target:  5'- gGgACGCGCCGCuuGGUgucgGCGCUGcUGCGu -3'
miRNA:   3'- gCgUGCGCGGCGu-CCA----CGCGGC-ACGU- -5'
16112 5' -63.1 NC_004065.1 + 131764 0.7 0.465507
Target:  5'- gGCGCGCGCC-CAGG-GCcGCCGUcccgagccgucgucgGCAc -3'
miRNA:   3'- gCGUGCGCGGcGUCCaCG-CGGCA---------------CGU- -5'
16112 5' -63.1 NC_004065.1 + 108648 0.69 0.497304
Target:  5'- uCGUguucuGCGUGCCGCuGGcGC-CCGUGCGg -3'
miRNA:   3'- -GCG-----UGCGCGGCGuCCaCGcGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 129447 0.68 0.589966
Target:  5'- gGUACGUGCCGCGGGcgGaaaaaaGCCGcaaGCGc -3'
miRNA:   3'- gCGUGCGCGGCGUCCa-Cg-----CGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 165494 0.67 0.608981
Target:  5'- uCGCcguCGCGCCGCAGcugcUGCGUgGUGa- -3'
miRNA:   3'- -GCGu--GCGCGGCGUCc---ACGCGgCACgu -5'
16112 5' -63.1 NC_004065.1 + 38617 0.68 0.589966
Target:  5'- uCGCGCGCGaCCuucauacucacgGCgaGGGUGCGCCGaGUc -3'
miRNA:   3'- -GCGUGCGC-GG------------CG--UCCACGCGGCaCGu -5'
16112 5' -63.1 NC_004065.1 + 132773 0.69 0.524527
Target:  5'- gGCGCGaagGUCGcCAGaaGCGCCGUGCGc -3'
miRNA:   3'- gCGUGCg--CGGC-GUCcaCGCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 59325 0.73 0.315233
Target:  5'- gGCAauCGCGCCGC-GG-GCGgCGUGCGa -3'
miRNA:   3'- gCGU--GCGCGGCGuCCaCGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 114973 0.68 0.589966
Target:  5'- uCGCGCGCGCCGUugcccucGGcccugGCGgCCGcGCGg -3'
miRNA:   3'- -GCGUGCGCGGCGu------CCa----CGC-GGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 159486 0.72 0.35755
Target:  5'- uCGUucucuCGCGCCuGCAGGcGCGCC-UGCAg -3'
miRNA:   3'- -GCGu----GCGCGG-CGUCCaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 33466 0.69 0.505407
Target:  5'- gGCACGCguucgcgGCCGUGGGcgccuacGCGCCG-GCAg -3'
miRNA:   3'- gCGUGCG-------CGGCGUCCa------CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 209304 0.67 0.599463
Target:  5'- uCGCcguCGuCGCCGUcGGUGcCGUCGUGUg -3'
miRNA:   3'- -GCGu--GC-GCGGCGuCCAC-GCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 132474 0.67 0.628056
Target:  5'- aGCACcCGCUGCAGcagGCGCUG-GCGc -3'
miRNA:   3'- gCGUGcGCGGCGUCca-CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 178900 0.72 0.360509
Target:  5'- cCGCuACGUGCCGCAGcaaucggcgcagaacG-GCGUCGUGCGu -3'
miRNA:   3'- -GCG-UGCGCGGCGUC---------------CaCGCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 187395 0.7 0.428134
Target:  5'- gGCGCGCGgCGCGGuGUgGCGUCGaggGCGa -3'
miRNA:   3'- gCGUGCGCgGCGUC-CA-CGCGGCa--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.