miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 33466 0.69 0.505407
Target:  5'- gGCACGCguucgcgGCCGUGGGcgccuacGCGCCG-GCAg -3'
miRNA:   3'- gCGUGCG-------CGGCGUCCa------CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 129976 0.66 0.685136
Target:  5'- aGCGCGUguccgcagaacGCCGCGGGgGCGgCGgacgagGCGa -3'
miRNA:   3'- gCGUGCG-----------CGGCGUCCaCGCgGCa-----CGU- -5'
16112 5' -63.1 NC_004065.1 + 219253 0.67 0.628056
Target:  5'- aGCACGCGCCGCcGGUGUaaCucGCGa -3'
miRNA:   3'- gCGUGCGCGGCGuCCACGcgGcaCGU- -5'
16112 5' -63.1 NC_004065.1 + 108648 0.69 0.497304
Target:  5'- uCGUguucuGCGUGCCGCuGGcGC-CCGUGCGg -3'
miRNA:   3'- -GCG-----UGCGCGGCGuCCaCGcGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 148644 0.66 0.713255
Target:  5'- aGUAC-UGCCuGCAGGa-CGCCGUGCu -3'
miRNA:   3'- gCGUGcGCGG-CGUCCacGCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 131764 0.7 0.465507
Target:  5'- gGCGCGCGCC-CAGG-GCcGCCGUcccgagccgucgucgGCAc -3'
miRNA:   3'- gCGUGCGCGGcGUCCaCG-CGGCA---------------CGU- -5'
16112 5' -63.1 NC_004065.1 + 187395 0.7 0.428134
Target:  5'- gGCGCGCGgCGCGGuGUgGCGUCGaggGCGa -3'
miRNA:   3'- gCGUGCGCgGCGUC-CA-CGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 35938 0.71 0.411742
Target:  5'- uGCucuguCGCgGCCGCAGGUcgucggacucGCGCCGcUGCu -3'
miRNA:   3'- gCGu----GCG-CGGCGUCCA----------CGCGGC-ACGu -5'
16112 5' -63.1 NC_004065.1 + 113304 0.66 0.685136
Target:  5'- aCGgGCGaCGCCGCucGcGCGCCGgacGCGg -3'
miRNA:   3'- -GCgUGC-GCGGCGucCaCGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 99497 0.66 0.685136
Target:  5'- gCGCAUGCGCgGUcGGUGa--UGUGCAa -3'
miRNA:   3'- -GCGUGCGCGgCGuCCACgcgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 150398 0.68 0.552298
Target:  5'- aCGCACGC-CCGCAGcGUcCGCgCGcGCAg -3'
miRNA:   3'- -GCGUGCGcGGCGUC-CAcGCG-GCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 96853 0.69 0.514476
Target:  5'- gGCGCGCugucGCCGCGGGcGCcguucugGCCGUGg- -3'
miRNA:   3'- gCGUGCG----CGGCGUCCaCG-------CGGCACgu -5'
16112 5' -63.1 NC_004065.1 + 35464 0.7 0.470735
Target:  5'- aGUcgACGCGCUGCGcGGUGC-CCGUGaCGa -3'
miRNA:   3'- gCG--UGCGCGGCGU-CCACGcGGCAC-GU- -5'
16112 5' -63.1 NC_004065.1 + 66102 0.7 0.439835
Target:  5'- uGCACGCGCUGgGGGgcgacaucaccgagGCGCUG-GCGc -3'
miRNA:   3'- gCGUGCGCGGCgUCCa-------------CGCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 103634 0.71 0.410933
Target:  5'- aCGCGCugauucuGCGCgaGCAGGcgGuCGCCGUGCGc -3'
miRNA:   3'- -GCGUG-------CGCGg-CGUCCa-C-GCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 7403 0.67 0.618514
Target:  5'- gGC-CGacCGCCGCAGGUGCGaCG-GUAc -3'
miRNA:   3'- gCGuGC--GCGGCGUCCACGCgGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 70511 0.67 0.646189
Target:  5'- gGCgGCGCccuucucgacggaGCUGCAGGcGCGCC-UGCAg -3'
miRNA:   3'- gCG-UGCG-------------CGGCGUCCaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 60978 0.67 0.647143
Target:  5'- uCGCGCGUacgGCCGCA---GCGCCuUGCAc -3'
miRNA:   3'- -GCGUGCG---CGGCGUccaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 68634 0.67 0.656674
Target:  5'- aGCugGCGUCGCuGGcacagGCGgCCGagGCGu -3'
miRNA:   3'- gCGugCGCGGCGuCCa----CGC-GGCa-CGU- -5'
16112 5' -63.1 NC_004065.1 + 28540 0.66 0.663335
Target:  5'- aGCGCcCGCCGCAuGcUGCGCCGcacgauacacuucgUGCGc -3'
miRNA:   3'- gCGUGcGCGGCGUcC-ACGCGGC--------------ACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.