miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16112 5' -63.1 NC_004065.1 + 35938 0.71 0.411742
Target:  5'- uGCucuguCGCgGCCGCAGGUcgucggacucGCGCCGcUGCu -3'
miRNA:   3'- gCGu----GCG-CGGCGUCCA----------CGCGGC-ACGu -5'
16112 5' -63.1 NC_004065.1 + 103634 0.71 0.410933
Target:  5'- aCGCGCugauucuGCGCgaGCAGGcgGuCGCCGUGCGc -3'
miRNA:   3'- -GCGUG-------CGCGg-CGUCCa-C-GCGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 168629 0.73 0.301994
Target:  5'- gCGCugGUGCCGCGGGcgGaGCCG-GCGc -3'
miRNA:   3'- -GCGugCGCGGCGUCCa-CgCGGCaCGU- -5'
16112 5' -63.1 NC_004065.1 + 149658 0.74 0.264861
Target:  5'- uGCACGCGCCGCAGc-GCGuugaCCGUGUc -3'
miRNA:   3'- gCGUGCGCGGCGUCcaCGC----GGCACGu -5'
16112 5' -63.1 NC_004065.1 + 195566 0.75 0.231517
Target:  5'- cCGCcauCGCGCCGCAGGauucGCgucccccgGCCGUGCGa -3'
miRNA:   3'- -GCGu--GCGCGGCGUCCa---CG--------CGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 188898 0.68 0.552298
Target:  5'- gGCAUaCGCgGCAGGUGCGCgG-GUc -3'
miRNA:   3'- gCGUGcGCGgCGUCCACGCGgCaCGu -5'
16112 5' -63.1 NC_004065.1 + 198642 0.68 0.556036
Target:  5'- --uGCGCGCCacCAGGUGCagcgugucguccgacGCCGUGUAc -3'
miRNA:   3'- gcgUGCGCGGc-GUCCACG---------------CGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 125640 0.68 0.561656
Target:  5'- uGCACGagcCGCCGCguGGcGUGUGCCauGUGCu -3'
miRNA:   3'- gCGUGC---GCGGCG--UC-CACGCGG--CACGu -5'
16112 5' -63.1 NC_004065.1 + 113438 0.66 0.703932
Target:  5'- aGCgGCG-GCCGgGGGgccCGCCGUGCc -3'
miRNA:   3'- gCG-UGCgCGGCgUCCac-GCGGCACGu -5'
16112 5' -63.1 NC_004065.1 + 113304 0.66 0.685136
Target:  5'- aCGgGCGaCGCCGCucGcGCGCCGgacGCGg -3'
miRNA:   3'- -GCgUGC-GCGGCGucCaCGCGGCa--CGU- -5'
16112 5' -63.1 NC_004065.1 + 99497 0.66 0.685136
Target:  5'- gCGCAUGCGCgGUcGGUGa--UGUGCAa -3'
miRNA:   3'- -GCGUGCGCGgCGuCCACgcgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 28540 0.66 0.663335
Target:  5'- aGCGCcCGCCGCAuGcUGCGCCGcacgauacacuucgUGCGc -3'
miRNA:   3'- gCGUGcGCGGCGUcC-ACGCGGC--------------ACGU- -5'
16112 5' -63.1 NC_004065.1 + 68634 0.67 0.656674
Target:  5'- aGCugGCGUCGCuGGcacagGCGgCCGagGCGu -3'
miRNA:   3'- gCGugCGCGGCGuCCa----CGC-GGCa-CGU- -5'
16112 5' -63.1 NC_004065.1 + 60978 0.67 0.647143
Target:  5'- uCGCGCGUacgGCCGCA---GCGCCuUGCAc -3'
miRNA:   3'- -GCGUGCG---CGGCGUccaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 70511 0.67 0.646189
Target:  5'- gGCgGCGCccuucucgacggaGCUGCAGGcGCGCC-UGCAg -3'
miRNA:   3'- gCG-UGCG-------------CGGCGUCCaCGCGGcACGU- -5'
16112 5' -63.1 NC_004065.1 + 123668 0.67 0.608981
Target:  5'- uCGCACGUGgCGC-GcUGC-CCGUGCAg -3'
miRNA:   3'- -GCGUGCGCgGCGuCcACGcGGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 106674 0.67 0.608981
Target:  5'- aCGCACGgGCUGUAgaucuccgacGGUGCGCCucguUGUg -3'
miRNA:   3'- -GCGUGCgCGGCGU----------CCACGCGGc---ACGu -5'
16112 5' -63.1 NC_004065.1 + 125430 0.68 0.58428
Target:  5'- gGCGCcaGCGCCucggGCAGGUuacccaccaugaugcGCGgCGUGCAc -3'
miRNA:   3'- gCGUG--CGCGG----CGUCCA---------------CGCgGCACGU- -5'
16112 5' -63.1 NC_004065.1 + 91175 0.68 0.561656
Target:  5'- uCGCAgGCgacgGCCGCGGaaGCGCCGUcgGCGu -3'
miRNA:   3'- -GCGUgCG----CGGCGUCcaCGCGGCA--CGU- -5'
16112 5' -63.1 NC_004065.1 + 69394 0.68 0.561656
Target:  5'- gCGCugGCggaacagcuGCCGaCGGG-GCGCCagGUGCGc -3'
miRNA:   3'- -GCGugCG---------CGGC-GUCCaCGCGG--CACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.