miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16113 3' -58.5 NC_004065.1 + 42105 0.65 0.918842
Target:  5'- gGCGCCGaCGuacgugaccguuUUGGCGCacgaCGGGGACAc- -3'
miRNA:   3'- -CGCGGC-GCu-----------AGCUGUG----GCCCCUGUag -5'
16113 3' -58.5 NC_004065.1 + 138210 0.65 0.917763
Target:  5'- --cCCGCuccuguauaauuUCGAUGCCGGGGAgGUCg -3'
miRNA:   3'- cgcGGCGcu----------AGCUGUGGCCCCUgUAG- -5'
16113 3' -58.5 NC_004065.1 + 68394 0.66 0.916676
Target:  5'- uCGCCGCGuUCGugGcgcagcaccccauccCCGGGGAg--- -3'
miRNA:   3'- cGCGGCGCuAGCugU---------------GGCCCCUguag -5'
16113 3' -58.5 NC_004065.1 + 35407 0.66 0.914476
Target:  5'- gGCGCCGUGGgaGAgUACCGGGacGACGg- -3'
miRNA:   3'- -CGCGGCGCUagCU-GUGGCCC--CUGUag -5'
16113 3' -58.5 NC_004065.1 + 147899 0.66 0.914476
Target:  5'- cGCGCCGCcgGAUaCGucaGCCGGGcGCAg- -3'
miRNA:   3'- -CGCGGCG--CUA-GCug-UGGCCCcUGUag -5'
16113 3' -58.5 NC_004065.1 + 228858 0.66 0.914476
Target:  5'- gGCGCCGa---CGACACaauGGGGACc-- -3'
miRNA:   3'- -CGCGGCgcuaGCUGUGg--CCCCUGuag -5'
16113 3' -58.5 NC_004065.1 + 33844 0.66 0.914476
Target:  5'- aCGCCGUGcgCGccaugaagagaaAgGCCGGGGAgAUg -3'
miRNA:   3'- cGCGGCGCuaGC------------UgUGGCCCCUgUAg -5'
16113 3' -58.5 NC_004065.1 + 119453 0.66 0.914476
Target:  5'- uCGCCGaGAcCGACGCCuGGcGGACcgCc -3'
miRNA:   3'- cGCGGCgCUaGCUGUGG-CC-CCUGuaG- -5'
16113 3' -58.5 NC_004065.1 + 69126 0.66 0.914476
Target:  5'- cGCGCgGCGcgcCGACaagguGCUGGGGAagcuGUCg -3'
miRNA:   3'- -CGCGgCGCua-GCUG-----UGGCCCCUg---UAG- -5'
16113 3' -58.5 NC_004065.1 + 128386 0.66 0.914476
Target:  5'- -gGCgGCGAgagcCGGCugUGGGGGCc-- -3'
miRNA:   3'- cgCGgCGCUa---GCUGugGCCCCUGuag -5'
16113 3' -58.5 NC_004065.1 + 23517 0.66 0.914476
Target:  5'- aGCGCCuCGAUCGACGagCGucGGACAa- -3'
miRNA:   3'- -CGCGGcGCUAGCUGUg-GCc-CCUGUag -5'
16113 3' -58.5 NC_004065.1 + 199453 0.66 0.908826
Target:  5'- uCGCCGCGG-CGGaa-CGGGGGCu-- -3'
miRNA:   3'- cGCGGCGCUaGCUgugGCCCCUGuag -5'
16113 3' -58.5 NC_004065.1 + 66623 0.66 0.908826
Target:  5'- -aGCCGCGGgcugCGGCGCUgcguGGcGGACGc- -3'
miRNA:   3'- cgCGGCGCUa---GCUGUGG----CC-CCUGUag -5'
16113 3' -58.5 NC_004065.1 + 99556 0.66 0.908826
Target:  5'- uCGCCGCGGcgGACgGCCGuGGuGCGUCa -3'
miRNA:   3'- cGCGGCGCUagCUG-UGGC-CCcUGUAG- -5'
16113 3' -58.5 NC_004065.1 + 112304 0.66 0.908826
Target:  5'- uGCGCgCGCGAgaGACGCgaGGGuGACGg- -3'
miRNA:   3'- -CGCG-GCGCUagCUGUGg-CCC-CUGUag -5'
16113 3' -58.5 NC_004065.1 + 203990 0.66 0.908826
Target:  5'- aCGCCGCGugCGAgcCGCUGGuGGACGa- -3'
miRNA:   3'- cGCGGCGCuaGCU--GUGGCC-CCUGUag -5'
16113 3' -58.5 NC_004065.1 + 32887 0.66 0.908826
Target:  5'- cGCGCCgGCGAgCGucuGCCGcuGGGCAUCc -3'
miRNA:   3'- -CGCGG-CGCUaGCug-UGGCc-CCUGUAG- -5'
16113 3' -58.5 NC_004065.1 + 168497 0.66 0.908826
Target:  5'- cGCGaCUGCGAUCGcCugC-GGGAUgcuGUCg -3'
miRNA:   3'- -CGC-GGCGCUAGCuGugGcCCCUG---UAG- -5'
16113 3' -58.5 NC_004065.1 + 170339 0.66 0.908826
Target:  5'- cGCuGCCGCGAaCGugGUCG-GGAUGUCg -3'
miRNA:   3'- -CG-CGGCGCUaGCugUGGCcCCUGUAG- -5'
16113 3' -58.5 NC_004065.1 + 33476 0.66 0.902965
Target:  5'- cGCgGCCGUGggCGccuacGCGCCGGcaGGCGUCu -3'
miRNA:   3'- -CG-CGGCGCuaGC-----UGUGGCCc-CUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.