miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16113 5' -54.3 NC_004065.1 + 161774 0.66 0.979849
Target:  5'- -cGA-CGCCAGCagccgguccguccucGUCAcCGCCGACg- -3'
miRNA:   3'- uaCUaGCGGUCG---------------CAGUuGUGGCUGag -5'
16113 5' -54.3 NC_004065.1 + 9467 0.66 0.978963
Target:  5'- ---cUCGUUGGCGagGAgACCGGCUCu -3'
miRNA:   3'- uacuAGCGGUCGCagUUgUGGCUGAG- -5'
16113 5' -54.3 NC_004065.1 + 213487 0.66 0.978963
Target:  5'- -cGGUCGCCGcgacCGUCGACGCC-ACg- -3'
miRNA:   3'- uaCUAGCGGUc---GCAGUUGUGGcUGag -5'
16113 5' -54.3 NC_004065.1 + 126073 0.66 0.978963
Target:  5'- gGUGAagGUCAGCcgcugGUCcaggAACugCGACUCg -3'
miRNA:   3'- -UACUagCGGUCG-----CAG----UUGugGCUGAG- -5'
16113 5' -54.3 NC_004065.1 + 118348 0.66 0.978963
Target:  5'- cAUGG-CGUCGGCGUCGGCGuCUGGaUCg -3'
miRNA:   3'- -UACUaGCGGUCGCAGUUGU-GGCUgAG- -5'
16113 5' -54.3 NC_004065.1 + 127597 0.66 0.978963
Target:  5'- -aGGUCGCagaGGgGa-GGCGCCGGCUCc -3'
miRNA:   3'- uaCUAGCGg--UCgCagUUGUGGCUGAG- -5'
16113 5' -54.3 NC_004065.1 + 212366 0.66 0.978963
Target:  5'- -cGAcCGUCGGuCGUCAu--CCGACUCc -3'
miRNA:   3'- uaCUaGCGGUC-GCAGUuguGGCUGAG- -5'
16113 5' -54.3 NC_004065.1 + 94085 0.66 0.976625
Target:  5'- -aGAUCGCCAGagGcCAucccCACCGACccUCa -3'
miRNA:   3'- uaCUAGCGGUCg-CaGUu---GUGGCUG--AG- -5'
16113 5' -54.3 NC_004065.1 + 122582 0.66 0.976625
Target:  5'- -cGGUCGCCAGCGcCAugGgCaCGAUcCa -3'
miRNA:   3'- uaCUAGCGGUCGCaGUugU-G-GCUGaG- -5'
16113 5' -54.3 NC_004065.1 + 58678 0.66 0.976625
Target:  5'- uUGAaCGCUAGUcaCAGCGCCGucGCUCc -3'
miRNA:   3'- uACUaGCGGUCGcaGUUGUGGC--UGAG- -5'
16113 5' -54.3 NC_004065.1 + 112753 0.66 0.976625
Target:  5'- cUGAUCGCCGGC-UCGuGCGCCu-CUUg -3'
miRNA:   3'- uACUAGCGGUCGcAGU-UGUGGcuGAG- -5'
16113 5' -54.3 NC_004065.1 + 19573 0.66 0.976625
Target:  5'- gGUGGcggCGgUAGCGUCGGCugCGAaaaaUCg -3'
miRNA:   3'- -UACUa--GCgGUCGCAGUUGugGCUg---AG- -5'
16113 5' -54.3 NC_004065.1 + 99908 0.66 0.974101
Target:  5'- uUGAUgcUGCCGGCGUCuucuucguccauGACGCCGGa-- -3'
miRNA:   3'- uACUA--GCGGUCGCAG------------UUGUGGCUgag -5'
16113 5' -54.3 NC_004065.1 + 71764 0.66 0.974101
Target:  5'- gGUGAccgUGUUGGCGUCGAuCGCCGccACUCu -3'
miRNA:   3'- -UACUa--GCGGUCGCAGUU-GUGGC--UGAG- -5'
16113 5' -54.3 NC_004065.1 + 39743 0.66 0.974101
Target:  5'- -gGAUCGCCgacgaaGGCGacuuUCcGCAgCGGCUCg -3'
miRNA:   3'- uaCUAGCGG------UCGC----AGuUGUgGCUGAG- -5'
16113 5' -54.3 NC_004065.1 + 177384 0.66 0.974101
Target:  5'- gAUGugcaGCCGGUGUuccCGACGCUGACUg -3'
miRNA:   3'- -UACuag-CGGUCGCA---GUUGUGGCUGAg -5'
16113 5' -54.3 NC_004065.1 + 7116 0.66 0.974101
Target:  5'- -cGAUCGCCA-CGuUCGAUGCCGAg-- -3'
miRNA:   3'- uaCUAGCGGUcGC-AGUUGUGGCUgag -5'
16113 5' -54.3 NC_004065.1 + 85665 0.66 0.973838
Target:  5'- ----cCGCCAGCGccgUCGACAUCGcguaccaGCUCg -3'
miRNA:   3'- uacuaGCGGUCGC---AGUUGUGGC-------UGAG- -5'
16113 5' -54.3 NC_004065.1 + 222700 0.66 0.971385
Target:  5'- ----cCGCC-GCGUCcgguacCACCGGCUCg -3'
miRNA:   3'- uacuaGCGGuCGCAGuu----GUGGCUGAG- -5'
16113 5' -54.3 NC_004065.1 + 107097 0.66 0.971385
Target:  5'- -gGAaCGCCGGCGUCGGguUCgGugUCg -3'
miRNA:   3'- uaCUaGCGGUCGCAGUUguGG-CugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.