miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16114 5' -56.6 NC_004065.1 + 94888 0.66 0.951659
Target:  5'- -cCCGUCGUcAUCAcccgCCGCGCC-CGc -3'
miRNA:   3'- caGGUAGCGcUAGUa---GGCGCGGuGCa -5'
16114 5' -56.6 NC_004065.1 + 17950 0.66 0.951659
Target:  5'- gGUCgCAggUCGCcggacGGUCGUCCGUcuGCCGCGc -3'
miRNA:   3'- -CAG-GU--AGCG-----CUAGUAGGCG--CGGUGCa -5'
16114 5' -56.6 NC_004065.1 + 139763 0.66 0.951659
Target:  5'- -cCCGUCGUGGUCAcUCUGCuCuCGCGg -3'
miRNA:   3'- caGGUAGCGCUAGU-AGGCGcG-GUGCa -5'
16114 5' -56.6 NC_004065.1 + 198111 0.66 0.951659
Target:  5'- -gCCA-CGCuGUCGgcgaCGCGCCGCGUc -3'
miRNA:   3'- caGGUaGCGcUAGUag--GCGCGGUGCA- -5'
16114 5' -56.6 NC_004065.1 + 211005 0.66 0.951659
Target:  5'- cGUCCAacccuucggagUCGuCGAUCAgUuuGCGCCGgGa -3'
miRNA:   3'- -CAGGU-----------AGC-GCUAGU-AggCGCGGUgCa -5'
16114 5' -56.6 NC_004065.1 + 160569 0.66 0.947606
Target:  5'- -gCCggCGCGA-CAUCUGCGaCACGa -3'
miRNA:   3'- caGGuaGCGCUaGUAGGCGCgGUGCa -5'
16114 5' -56.6 NC_004065.1 + 205178 0.66 0.947606
Target:  5'- -gCCGUCGCcgccaaCAUCgGgCGCCGCGUg -3'
miRNA:   3'- caGGUAGCGcua---GUAGgC-GCGGUGCA- -5'
16114 5' -56.6 NC_004065.1 + 134093 0.66 0.947606
Target:  5'- uGUCCGUUccuaGCcucaGAUCgcGUCCGCGCC-CGUc -3'
miRNA:   3'- -CAGGUAG----CG----CUAG--UAGGCGCGGuGCA- -5'
16114 5' -56.6 NC_004065.1 + 1126 0.66 0.947606
Target:  5'- uGUCUGUCggcuGCGAguguuguugcUCGUgUGCGCCGCGg -3'
miRNA:   3'- -CAGGUAG----CGCU----------AGUAgGCGCGGUGCa -5'
16114 5' -56.6 NC_004065.1 + 120349 0.66 0.947606
Target:  5'- cUCCAccUCGgGGUaCGUCgGCGCCugACGUu -3'
miRNA:   3'- cAGGU--AGCgCUA-GUAGgCGCGG--UGCA- -5'
16114 5' -56.6 NC_004065.1 + 457 0.66 0.943335
Target:  5'- aUCCAgacgCGCGcucgccugaGUCAgccUCCGgGCCGCGc -3'
miRNA:   3'- cAGGUa---GCGC---------UAGU---AGGCgCGGUGCa -5'
16114 5' -56.6 NC_004065.1 + 122802 0.66 0.943335
Target:  5'- -gUCAUCuCGcgCAUCCGCGCuCGCa- -3'
miRNA:   3'- caGGUAGcGCuaGUAGGCGCG-GUGca -5'
16114 5' -56.6 NC_004065.1 + 132372 0.66 0.943335
Target:  5'- -gCCAgaUCGCGAaCAaaccggcgucUCCGUGCCGCa- -3'
miRNA:   3'- caGGU--AGCGCUaGU----------AGGCGCGGUGca -5'
16114 5' -56.6 NC_004065.1 + 35940 0.66 0.942896
Target:  5'- cUCUGUCGCGGccgcaggUCGUCggacuCGCGCCGCu- -3'
miRNA:   3'- cAGGUAGCGCU-------AGUAG-----GCGCGGUGca -5'
16114 5' -56.6 NC_004065.1 + 126547 0.66 0.938843
Target:  5'- gGUCCca-GCGA-CAUCCGCGCgCAgauCGUg -3'
miRNA:   3'- -CAGGuagCGCUaGUAGGCGCG-GU---GCA- -5'
16114 5' -56.6 NC_004065.1 + 91922 0.66 0.938843
Target:  5'- -gCCGUCGCGGUCcgaCGuCGCUAUGa -3'
miRNA:   3'- caGGUAGCGCUAGuagGC-GCGGUGCa -5'
16114 5' -56.6 NC_004065.1 + 78450 0.66 0.937452
Target:  5'- -cUCGaCGaCGGUCGaggaugaugaugucUCCGCGCCGCGUc -3'
miRNA:   3'- caGGUaGC-GCUAGU--------------AGGCGCGGUGCA- -5'
16114 5' -56.6 NC_004065.1 + 106322 0.66 0.934128
Target:  5'- aUUCAUCaCGAUCAccgaUCCGCGuUCGCGg -3'
miRNA:   3'- cAGGUAGcGCUAGU----AGGCGC-GGUGCa -5'
16114 5' -56.6 NC_004065.1 + 164957 0.66 0.934128
Target:  5'- aUCUGUCGCGAUCcccCCuCGCCGCc- -3'
miRNA:   3'- cAGGUAGCGCUAGua-GGcGCGGUGca -5'
16114 5' -56.6 NC_004065.1 + 76813 0.66 0.934128
Target:  5'- cGUUCAUCGCcGUCG-CgGCGCuCGCGa -3'
miRNA:   3'- -CAGGUAGCGcUAGUaGgCGCG-GUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.