miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 3' -53 NC_004065.1 + 225174 0.66 0.991686
Target:  5'- cGA-GGGCGGC-GGUgGUGGUGGUu- -3'
miRNA:   3'- aCUaCCUGUCGuCCAaCGCCAUCAcg -5'
16115 3' -53 NC_004065.1 + 202679 0.66 0.989224
Target:  5'- aGAUGGucauCGGUAGGUcgcaugGCGGUuccGCg -3'
miRNA:   3'- aCUACCu---GUCGUCCAa-----CGCCAucaCG- -5'
16115 3' -53 NC_004065.1 + 8289 0.66 0.989224
Target:  5'- cUGAUcgGGGCcGCGGuGUUaGCGGUcGUGUa -3'
miRNA:   3'- -ACUA--CCUGuCGUC-CAA-CGCCAuCACG- -5'
16115 3' -53 NC_004065.1 + 36126 0.66 0.987796
Target:  5'- cUGccGG-CGGC-GGUUGUGGUGGuUGUg -3'
miRNA:   3'- -ACuaCCuGUCGuCCAACGCCAUC-ACG- -5'
16115 3' -53 NC_004065.1 + 6358 0.66 0.987796
Target:  5'- cGGUGuGAgCAGUaucuGGGUgacgGgGGUAGUGUg -3'
miRNA:   3'- aCUAC-CU-GUCG----UCCAa---CgCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 6423 0.66 0.987796
Target:  5'- gUGGUGGAUAGauaCAGGUUuaGuCGGgagcGUGCa -3'
miRNA:   3'- -ACUACCUGUC---GUCCAA--C-GCCau--CACG- -5'
16115 3' -53 NC_004065.1 + 143895 0.66 0.986227
Target:  5'- aGGUGcGCGGaCGGGa--CGGUGGUGCc -3'
miRNA:   3'- aCUACcUGUC-GUCCaacGCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 118133 0.66 0.986227
Target:  5'- ---cGGACG--AGGUUGCGGUAGa-- -3'
miRNA:   3'- acuaCCUGUcgUCCAACGCCAUCacg -5'
16115 3' -53 NC_004065.1 + 166738 0.67 0.98263
Target:  5'- cGAUGGGCAGCGGGagcucGCcGUAGc-- -3'
miRNA:   3'- aCUACCUGUCGUCCaa---CGcCAUCacg -5'
16115 3' -53 NC_004065.1 + 182484 0.67 0.98263
Target:  5'- gGGUGGGCGGU-GGUcccaauuggGCGGUGGUc- -3'
miRNA:   3'- aCUACCUGUCGuCCAa--------CGCCAUCAcg -5'
16115 3' -53 NC_004065.1 + 124975 0.67 0.980586
Target:  5'- cGAaGGGCGGcCAGaGgcGCGGgucGUGCa -3'
miRNA:   3'- aCUaCCUGUC-GUC-CaaCGCCau-CACG- -5'
16115 3' -53 NC_004065.1 + 11963 0.67 0.975715
Target:  5'- -cAUGGGCAGCgAGGUccggugaUGCuGGUGGccGCg -3'
miRNA:   3'- acUACCUGUCG-UCCA-------ACG-CCAUCa-CG- -5'
16115 3' -53 NC_004065.1 + 136607 0.67 0.973375
Target:  5'- gGGUGGGguGCGGGgcGCuGGUccgAGgcgGCg -3'
miRNA:   3'- aCUACCUguCGUCCaaCG-CCA---UCa--CG- -5'
16115 3' -53 NC_004065.1 + 202053 0.67 0.973375
Target:  5'- cGggGGACugaacAGCAGGUucuugcUGCGGaacaacuGUGCg -3'
miRNA:   3'- aCuaCCUG-----UCGUCCA------ACGCCau-----CACG- -5'
16115 3' -53 NC_004065.1 + 180126 0.68 0.970589
Target:  5'- cGAUGGACGGCGGGUUccGUcuGGaGGUc- -3'
miRNA:   3'- aCUACCUGUCGUCCAA--CG--CCaUCAcg -5'
16115 3' -53 NC_004065.1 + 196814 0.68 0.970589
Target:  5'- cGGUGGGgGGUcguGGUcaccUGCGGcaGGUGCg -3'
miRNA:   3'- aCUACCUgUCGu--CCA----ACGCCa-UCACG- -5'
16115 3' -53 NC_004065.1 + 186378 0.68 0.970589
Target:  5'- gUGAUGcGACGGCggAGGcUGCGuUGGUGg -3'
miRNA:   3'- -ACUAC-CUGUCG--UCCaACGCcAUCACg -5'
16115 3' -53 NC_004065.1 + 115769 0.68 0.970589
Target:  5'- aGcgGaGGCGGCAGGguugGCGGUcccGG-GCa -3'
miRNA:   3'- aCuaC-CUGUCGUCCaa--CGCCA---UCaCG- -5'
16115 3' -53 NC_004065.1 + 165343 0.68 0.967599
Target:  5'- cUGcUGGAUcuGguGGaUGuCGGUGGUGCa -3'
miRNA:   3'- -ACuACCUGu-CguCCaAC-GCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 185452 0.68 0.9644
Target:  5'- cGA-GGAguGaugaugaAGGUgGUGGUGGUGCg -3'
miRNA:   3'- aCUaCCUguCg------UCCAaCGCCAUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.