Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16115 | 3' | -53 | NC_004065.1 | + | 125088 | 1.13 | 0.004293 |
Target: 5'- gUGAUGGACAGCAGGUUGCGGUAGUGCg -3' miRNA: 3'- -ACUACCUGUCGUCCAACGCCAUCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 103703 | 0.78 | 0.513956 |
Target: 5'- cGGUGGGCGGCGGGgagcgccugGCGGgcGUGa -3' miRNA: 3'- aCUACCUGUCGUCCaa-------CGCCauCACg -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 228310 | 0.76 | 0.634905 |
Target: 5'- uUGGgugGGACGGCGGGUgcuuuggGCGGUGGgacGUa -3' miRNA: 3'- -ACUa--CCUGUCGUCCAa------CGCCAUCa--CG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 96270 | 0.74 | 0.735793 |
Target: 5'- gGAUGGACGGCGGG--GCGGccagGG-GCg -3' miRNA: 3'- aCUACCUGUCGUCCaaCGCCa---UCaCG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 213267 | 0.74 | 0.745536 |
Target: 5'- gUGGUGGugGuGguGGUaGUGGUAGUGg -3' miRNA: 3'- -ACUACCugU-CguCCAaCGCCAUCACg -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 145728 | 0.73 | 0.774131 |
Target: 5'- cGGUGGAggaGGCGGGa-GCGGUgaugAGUGCg -3' miRNA: 3'- aCUACCUg--UCGUCCaaCGCCA----UCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 62373 | 0.73 | 0.801583 |
Target: 5'- cGGUGG-CGGCGGGg-GUGGUGGcgGCg -3' miRNA: 3'- aCUACCuGUCGUCCaaCGCCAUCa-CG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 116821 | 0.73 | 0.819132 |
Target: 5'- cGAccgGGGCAGCGuGGccgUGaUGGUGGUGCa -3' miRNA: 3'- aCUa--CCUGUCGU-CCa--AC-GCCAUCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 52493 | 0.72 | 0.827656 |
Target: 5'- gUGuUGGGCGcuguuggcGCGcGGUgGCGGUGGUGCa -3' miRNA: 3'- -ACuACCUGU--------CGU-CCAaCGCCAUCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 137648 | 0.72 | 0.836001 |
Target: 5'- -cGUGGGCuAGCAGGUUGCGuUGGaaggGCu -3' miRNA: 3'- acUACCUG-UCGUCCAACGCcAUCa---CG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 115575 | 0.72 | 0.84416 |
Target: 5'- aUGGUGaGACGGC-GGUgGUGGUGGcgGCg -3' miRNA: 3'- -ACUAC-CUGUCGuCCAaCGCCAUCa-CG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 26595 | 0.71 | 0.867456 |
Target: 5'- aUGAUGGGCAaUAGGUacgGCGGacagagucggAGUGCg -3' miRNA: 3'- -ACUACCUGUcGUCCAa--CGCCa---------UCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 127834 | 0.71 | 0.874806 |
Target: 5'- cGAUcu-CGGCGGcGUUGCGGaGGUGCg -3' miRNA: 3'- aCUAccuGUCGUC-CAACGCCaUCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 189830 | 0.71 | 0.874806 |
Target: 5'- aGAUGGugaACGGCAGGgcucUGaGGUGGUGg -3' miRNA: 3'- aCUACC---UGUCGUCCa---ACgCCAUCACg -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 167303 | 0.71 | 0.888848 |
Target: 5'- gUGAUGGugGGauucguGGUaGUGGUGGUGg -3' miRNA: 3'- -ACUACCugUCgu----CCAaCGCCAUCACg -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 26952 | 0.7 | 0.91419 |
Target: 5'- gUGGUGGAaAGaugauGGcgGUGGUGGUGCg -3' miRNA: 3'- -ACUACCUgUCgu---CCaaCGCCAUCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 69110 | 0.7 | 0.919937 |
Target: 5'- cGGUGGACgAGCAGGacgcGCGGcgcgccgacaaGGUGCu -3' miRNA: 3'- aCUACCUG-UCGUCCaa--CGCCa----------UCACG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 501 | 0.7 | 0.925445 |
Target: 5'- cGGUGGACAGCcguuuucuGGGagucuacuacGCGGUGGcGCg -3' miRNA: 3'- aCUACCUGUCG--------UCCaa--------CGCCAUCaCG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 32729 | 0.7 | 0.930713 |
Target: 5'- aGAUGGACAGCAcacUGUGGgAGUcGCu -3' miRNA: 3'- aCUACCUGUCGUccaACGCCaUCA-CG- -5' |
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16115 | 3' | -53 | NC_004065.1 | + | 126526 | 0.7 | 0.930713 |
Target: 5'- gUGAUGGACauGGCGGGUUaCGGUcccaGCg -3' miRNA: 3'- -ACUACCUG--UCGUCCAAcGCCAuca-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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