miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 3' -53 NC_004065.1 + 501 0.7 0.925445
Target:  5'- cGGUGGACAGCcguuuucuGGGagucuacuacGCGGUGGcGCg -3'
miRNA:   3'- aCUACCUGUCG--------UCCaa--------CGCCAUCaCG- -5'
16115 3' -53 NC_004065.1 + 6358 0.66 0.987796
Target:  5'- cGGUGuGAgCAGUaucuGGGUgacgGgGGUAGUGUg -3'
miRNA:   3'- aCUAC-CU-GUCG----UCCAa---CgCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 6423 0.66 0.987796
Target:  5'- gUGGUGGAUAGauaCAGGUUuaGuCGGgagcGUGCa -3'
miRNA:   3'- -ACUACCUGUC---GUCCAA--C-GCCau--CACG- -5'
16115 3' -53 NC_004065.1 + 8289 0.66 0.989224
Target:  5'- cUGAUcgGGGCcGCGGuGUUaGCGGUcGUGUa -3'
miRNA:   3'- -ACUA--CCUGuCGUC-CAA-CGCCAuCACG- -5'
16115 3' -53 NC_004065.1 + 11963 0.67 0.975715
Target:  5'- -cAUGGGCAGCgAGGUccggugaUGCuGGUGGccGCg -3'
miRNA:   3'- acUACCUGUCG-UCCA-------ACG-CCAUCa-CG- -5'
16115 3' -53 NC_004065.1 + 26595 0.71 0.867456
Target:  5'- aUGAUGGGCAaUAGGUacgGCGGacagagucggAGUGCg -3'
miRNA:   3'- -ACUACCUGUcGUCCAa--CGCCa---------UCACG- -5'
16115 3' -53 NC_004065.1 + 26952 0.7 0.91419
Target:  5'- gUGGUGGAaAGaugauGGcgGUGGUGGUGCg -3'
miRNA:   3'- -ACUACCUgUCgu---CCaaCGCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 29418 0.68 0.957352
Target:  5'- cGGUGGGCcagGGCAGGgagaagacggUGCcggGGUAGgugGCg -3'
miRNA:   3'- aCUACCUG---UCGUCCa---------ACG---CCAUCa--CG- -5'
16115 3' -53 NC_004065.1 + 32729 0.7 0.930713
Target:  5'- aGAUGGACAGCAcacUGUGGgAGUcGCu -3'
miRNA:   3'- aCUACCUGUCGUccaACGCCaUCA-CG- -5'
16115 3' -53 NC_004065.1 + 36126 0.66 0.987796
Target:  5'- cUGccGG-CGGC-GGUUGUGGUGGuUGUg -3'
miRNA:   3'- -ACuaCCuGUCGuCCAACGCCAUC-ACG- -5'
16115 3' -53 NC_004065.1 + 52493 0.72 0.827656
Target:  5'- gUGuUGGGCGcuguuggcGCGcGGUgGCGGUGGUGCa -3'
miRNA:   3'- -ACuACCUGU--------CGU-CCAaCGCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 62373 0.73 0.801583
Target:  5'- cGGUGG-CGGCGGGg-GUGGUGGcgGCg -3'
miRNA:   3'- aCUACCuGUCGUCCaaCGCCAUCa-CG- -5'
16115 3' -53 NC_004065.1 + 69110 0.7 0.919937
Target:  5'- cGGUGGACgAGCAGGacgcGCGGcgcgccgacaaGGUGCu -3'
miRNA:   3'- aCUACCUG-UCGUCCaa--CGCCa----------UCACG- -5'
16115 3' -53 NC_004065.1 + 72509 0.68 0.960986
Target:  5'- aGGUGGaACGGCAGGU---GGUGcUGCg -3'
miRNA:   3'- aCUACC-UGUCGUCCAacgCCAUcACG- -5'
16115 3' -53 NC_004065.1 + 74846 0.68 0.960986
Target:  5'- cGAgGGGC-GCAGGUUgaggcgGCGGUGGUa- -3'
miRNA:   3'- aCUaCCUGuCGUCCAA------CGCCAUCAcg -5'
16115 3' -53 NC_004065.1 + 96270 0.74 0.735793
Target:  5'- gGAUGGACGGCGGG--GCGGccagGG-GCg -3'
miRNA:   3'- aCUACCUGUCGUCCaaCGCCa---UCaCG- -5'
16115 3' -53 NC_004065.1 + 103703 0.78 0.513956
Target:  5'- cGGUGGGCGGCGGGgagcgccugGCGGgcGUGa -3'
miRNA:   3'- aCUACCUGUCGUCCaa-------CGCCauCACg -5'
16115 3' -53 NC_004065.1 + 109131 0.68 0.960986
Target:  5'- gUGGcggGGACGGCGGGUgacgGCGGUuccGUc -3'
miRNA:   3'- -ACUa--CCUGUCGUCCAa---CGCCAucaCG- -5'
16115 3' -53 NC_004065.1 + 115575 0.72 0.84416
Target:  5'- aUGGUGaGACGGC-GGUgGUGGUGGcgGCg -3'
miRNA:   3'- -ACUAC-CUGUCGuCCAaCGCCAUCa-CG- -5'
16115 3' -53 NC_004065.1 + 115769 0.68 0.970589
Target:  5'- aGcgGaGGCGGCAGGguugGCGGUcccGG-GCa -3'
miRNA:   3'- aCuaC-CUGUCGUCCaa--CGCCA---UCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.