miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 3' -53 NC_004065.1 + 118133 0.66 0.986227
Target:  5'- ---cGGACG--AGGUUGCGGUAGa-- -3'
miRNA:   3'- acuaCCUGUcgUCCAACGCCAUCacg -5'
16115 3' -53 NC_004065.1 + 29418 0.68 0.957352
Target:  5'- cGGUGGGCcagGGCAGGgagaagacggUGCcggGGUAGgugGCg -3'
miRNA:   3'- aCUACCUG---UCGUCCa---------ACG---CCAUCa--CG- -5'
16115 3' -53 NC_004065.1 + 72509 0.68 0.960986
Target:  5'- aGGUGGaACGGCAGGU---GGUGcUGCg -3'
miRNA:   3'- aCUACC-UGUCGUCCAacgCCAUcACG- -5'
16115 3' -53 NC_004065.1 + 109131 0.68 0.960986
Target:  5'- gUGGcggGGACGGCGGGUgacgGCGGUuccGUc -3'
miRNA:   3'- -ACUa--CCUGUCGUCCAa---CGCCAucaCG- -5'
16115 3' -53 NC_004065.1 + 74846 0.68 0.960986
Target:  5'- cGAgGGGC-GCAGGUUgaggcgGCGGUGGUa- -3'
miRNA:   3'- aCUaCCUGuCGUCCAA------CGCCAUCAcg -5'
16115 3' -53 NC_004065.1 + 196814 0.68 0.970589
Target:  5'- cGGUGGGgGGUcguGGUcaccUGCGGcaGGUGCg -3'
miRNA:   3'- aCUACCUgUCGu--CCA----ACGCCa-UCACG- -5'
16115 3' -53 NC_004065.1 + 124975 0.67 0.980586
Target:  5'- cGAaGGGCGGcCAGaGgcGCGGgucGUGCa -3'
miRNA:   3'- aCUaCCUGUC-GUC-CaaCGCCau-CACG- -5'
16115 3' -53 NC_004065.1 + 166738 0.67 0.98263
Target:  5'- cGAUGGGCAGCGGGagcucGCcGUAGc-- -3'
miRNA:   3'- aCUACCUGUCGUCCaa---CGcCAUCacg -5'
16115 3' -53 NC_004065.1 + 182484 0.67 0.98263
Target:  5'- gGGUGGGCGGU-GGUcccaauuggGCGGUGGUc- -3'
miRNA:   3'- aCUACCUGUCGuCCAa--------CGCCAUCAcg -5'
16115 3' -53 NC_004065.1 + 197849 0.69 0.949407
Target:  5'- ---gGGGCGGCAGGagugcaccUUGaCGGUGGacUGCa -3'
miRNA:   3'- acuaCCUGUCGUCC--------AAC-GCCAUC--ACG- -5'
16115 3' -53 NC_004065.1 + 178759 0.69 0.948985
Target:  5'- gGAUGGugGcguuCAGGUaccgccuuccucuUGUGGUGGUGUc -3'
miRNA:   3'- aCUACCugUc---GUCCA-------------ACGCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 69110 0.7 0.919937
Target:  5'- cGGUGGACgAGCAGGacgcGCGGcgcgccgacaaGGUGCu -3'
miRNA:   3'- aCUACCUG-UCGUCCaa--CGCCa----------UCACG- -5'
16115 3' -53 NC_004065.1 + 96270 0.74 0.735793
Target:  5'- gGAUGGACGGCGGG--GCGGccagGG-GCg -3'
miRNA:   3'- aCUACCUGUCGUCCaaCGCCa---UCaCG- -5'
16115 3' -53 NC_004065.1 + 213267 0.74 0.745536
Target:  5'- gUGGUGGugGuGguGGUaGUGGUAGUGg -3'
miRNA:   3'- -ACUACCugU-CguCCAaCGCCAUCACg -5'
16115 3' -53 NC_004065.1 + 145728 0.73 0.774131
Target:  5'- cGGUGGAggaGGCGGGa-GCGGUgaugAGUGCg -3'
miRNA:   3'- aCUACCUg--UCGUCCaaCGCCA----UCACG- -5'
16115 3' -53 NC_004065.1 + 62373 0.73 0.801583
Target:  5'- cGGUGG-CGGCGGGg-GUGGUGGcgGCg -3'
miRNA:   3'- aCUACCuGUCGUCCaaCGCCAUCa-CG- -5'
16115 3' -53 NC_004065.1 + 116821 0.73 0.819132
Target:  5'- cGAccgGGGCAGCGuGGccgUGaUGGUGGUGCa -3'
miRNA:   3'- aCUa--CCUGUCGU-CCa--AC-GCCAUCACG- -5'
16115 3' -53 NC_004065.1 + 137648 0.72 0.836001
Target:  5'- -cGUGGGCuAGCAGGUUGCGuUGGaaggGCu -3'
miRNA:   3'- acUACCUG-UCGUCCAACGCcAUCa---CG- -5'
16115 3' -53 NC_004065.1 + 26595 0.71 0.867456
Target:  5'- aUGAUGGGCAaUAGGUacgGCGGacagagucggAGUGCg -3'
miRNA:   3'- -ACUACCUGUcGUCCAa--CGCCa---------UCACG- -5'
16115 3' -53 NC_004065.1 + 167303 0.71 0.888848
Target:  5'- gUGAUGGugGGauucguGGUaGUGGUGGUGg -3'
miRNA:   3'- -ACUACCugUCgu----CCAaCGCCAUCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.