miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 5' -64.1 NC_004065.1 + 170286 0.65 0.701843
Target:  5'- aGGCAgaucucgaaagaguCCGCgacgGuCGCCGUgCGCCgCGGCCg -3'
miRNA:   3'- gCCGU--------------GGUGg---C-GCGGCA-GCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 56572 0.66 0.699083
Target:  5'- uGGCgucgagcgccGCCACCG-GUaCGUCgaacgucaccccuaaGCCCAGCCc -3'
miRNA:   3'- gCCG----------UGGUGGCgCG-GCAG---------------CGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 50350 0.66 0.695396
Target:  5'- gCGGCagcuucuucuGgCACUGCuCC-UCGCCCAGCUc -3'
miRNA:   3'- -GCCG----------UgGUGGCGcGGcAGCGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 105201 0.66 0.695396
Target:  5'- aGGCggaGCCGCUGUucGUgGaCGCCCGGCg -3'
miRNA:   3'- gCCG---UGGUGGCG--CGgCaGCGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 163254 0.66 0.695396
Target:  5'- uCGGCGCagcgGCgGCGCCGgCGCCU--CCu -3'
miRNA:   3'- -GCCGUGg---UGgCGCGGCaGCGGGucGG- -5'
16115 5' -64.1 NC_004065.1 + 117098 0.66 0.695396
Target:  5'- aCGGguUCGCgagCGUGCCG-CGCCCugguGUCg -3'
miRNA:   3'- -GCCguGGUG---GCGCGGCaGCGGGu---CGG- -5'
16115 5' -64.1 NC_004065.1 + 99957 0.66 0.695396
Target:  5'- gCGGCuGCUGCUGCGaaaCGcCGUCC-GCCa -3'
miRNA:   3'- -GCCG-UGGUGGCGCg--GCaGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 67949 0.66 0.695396
Target:  5'- -cGCACCGCCaCGCaGUCGCU--GCCg -3'
miRNA:   3'- gcCGUGGUGGcGCGgCAGCGGguCGG- -5'
16115 5' -64.1 NC_004065.1 + 97189 0.66 0.695396
Target:  5'- gGGCucgUCGUCGCGCUG-CGCCUguaGGCCa -3'
miRNA:   3'- gCCGu--GGUGGCGCGGCaGCGGG---UCGG- -5'
16115 5' -64.1 NC_004065.1 + 150369 0.66 0.695396
Target:  5'- uCGGCACCuCCcgggucaucaGCGCCGacacgcaCGCCCgcAGCg -3'
miRNA:   3'- -GCCGUGGuGG----------CGCGGCa------GCGGG--UCGg -5'
16115 5' -64.1 NC_004065.1 + 149183 0.66 0.695396
Target:  5'- uGGCGCUcguCCGauCCGcUCGCUCGGCg -3'
miRNA:   3'- gCCGUGGu--GGCgcGGC-AGCGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 35126 0.66 0.695396
Target:  5'- aCGGCGgCGCCGUggucucgauGCCGaaGCCCAaGaCCc -3'
miRNA:   3'- -GCCGUgGUGGCG---------CGGCagCGGGU-C-GG- -5'
16115 5' -64.1 NC_004065.1 + 43429 0.66 0.695396
Target:  5'- --uCACCAUCGacacuccucauCGUCGUCGUCgCAGCCa -3'
miRNA:   3'- gccGUGGUGGC-----------GCGGCAGCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 123404 0.66 0.695396
Target:  5'- gGGCugUAgaagcUCGgGuuGUgGCCCAGCUu -3'
miRNA:   3'- gCCGugGU-----GGCgCggCAgCGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 160613 0.66 0.695396
Target:  5'- uCGGCGCgCACCugGCGCCccGUCGgC-AGCUg -3'
miRNA:   3'- -GCCGUG-GUGG--CGCGG--CAGCgGgUCGG- -5'
16115 5' -64.1 NC_004065.1 + 207541 0.66 0.694474
Target:  5'- cCGcGCGCU-CCGCGUCGUCGCgCCugagaaacacauaGGCa -3'
miRNA:   3'- -GC-CGUGGuGGCGCGGCAGCG-GG-------------UCGg -5'
16115 5' -64.1 NC_004065.1 + 134147 0.66 0.68615
Target:  5'- aCGGCACgACUGUGUgGUgGUCCAcacGCa -3'
miRNA:   3'- -GCCGUGgUGGCGCGgCAgCGGGU---CGg -5'
16115 5' -64.1 NC_004065.1 + 29507 0.66 0.68615
Target:  5'- aGGUACuCGgUGaCGCCGgCGCUgCAGCCg -3'
miRNA:   3'- gCCGUG-GUgGC-GCGGCaGCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 199156 0.66 0.68615
Target:  5'- gGGCGCUcgaACC-CGCCGUCGacaGGCUg -3'
miRNA:   3'- gCCGUGG---UGGcGCGGCAGCgggUCGG- -5'
16115 5' -64.1 NC_004065.1 + 106492 0.66 0.68615
Target:  5'- cCGuuAUCACCGCGCCcugaGUCGaauCCGGCa -3'
miRNA:   3'- -GCcgUGGUGGCGCGG----CAGCg--GGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.