miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 5' -64.1 NC_004065.1 + 170286 0.65 0.701843
Target:  5'- aGGCAgaucucgaaagaguCCGCgacgGuCGCCGUgCGCCgCGGCCg -3'
miRNA:   3'- gCCGU--------------GGUGg---C-GCGGCA-GCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 31120 0.66 0.648854
Target:  5'- aGGCACCACCGUcaCCGUC-UCC-GUCu -3'
miRNA:   3'- gCCGUGGUGGCGc-GGCAGcGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 14696 0.66 0.671279
Target:  5'- aCGGauccaCACCGCCacccaucagauccaCGCCGUCaCCCAGCa -3'
miRNA:   3'- -GCC-----GUGGUGGc-------------GCGGCAGcGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 141074 0.66 0.66755
Target:  5'- uGGCACUACgCGgGCC--UGgCCAGCUa -3'
miRNA:   3'- gCCGUGGUG-GCgCGGcaGCgGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 149711 0.66 0.648854
Target:  5'- gGGcCGCgGCCGCGCCGgcccUCggacucauagcgGUCCAGCg -3'
miRNA:   3'- gCC-GUGgUGGCGCGGC----AG------------CGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 199556 0.66 0.66755
Target:  5'- gGGCGcgccCCAUCGUGCCG-CGgUCCAgacGCCg -3'
miRNA:   3'- gCCGU----GGUGGCGCGGCaGC-GGGU---CGG- -5'
16115 5' -64.1 NC_004065.1 + 117431 0.66 0.665684
Target:  5'- uGGCAgCCgAUCGCGagucaaauacugCGUCGUCCGGCUc -3'
miRNA:   3'- gCCGU-GG-UGGCGCg-----------GCAGCGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 82664 0.66 0.648854
Target:  5'- cCGGCACCaACCucugguGCGCaggGUCGgCCaCGGCUu -3'
miRNA:   3'- -GCCGUGG-UGG------CGCGg--CAGC-GG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 191475 0.66 0.676865
Target:  5'- gCGGCACCACCaCGCaCGcgUGUCCccCCa -3'
miRNA:   3'- -GCCGUGGUGGcGCG-GCa-GCGGGucGG- -5'
16115 5' -64.1 NC_004065.1 + 100884 0.66 0.648854
Target:  5'- aGGUAguucuccuCCGCCGCGCacugcugaUCGUCCGGCa -3'
miRNA:   3'- gCCGU--------GGUGGCGCGgc------AGCGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 110415 0.66 0.658211
Target:  5'- aCGGCGucuccuCCGCCGcCGgCGUCcugcacguccaGgCCAGCCg -3'
miRNA:   3'- -GCCGU------GGUGGC-GCgGCAG-----------CgGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 199872 0.66 0.648854
Target:  5'- uCGGUGCCGCacagcacgaGCgGCCgGUCGCCCuccCCg -3'
miRNA:   3'- -GCCGUGGUGg--------CG-CGG-CAGCGGGuc-GG- -5'
16115 5' -64.1 NC_004065.1 + 229125 0.66 0.652598
Target:  5'- gCGGCggucaacccguaacGCCugUagcaugccggcgggGCGCCcUCGCCCGGCa -3'
miRNA:   3'- -GCCG--------------UGGugG--------------CGCGGcAGCGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 191072 0.66 0.648854
Target:  5'- ---aACCcCCGCGCCgGUCGCUCgAGCUc -3'
miRNA:   3'- gccgUGGuGGCGCGG-CAGCGGG-UCGG- -5'
16115 5' -64.1 NC_004065.1 + 27288 0.66 0.676865
Target:  5'- gCGGCGCCGCCGaCGaCG-CGUCUAucGUCg -3'
miRNA:   3'- -GCCGUGGUGGC-GCgGCaGCGGGU--CGG- -5'
16115 5' -64.1 NC_004065.1 + 45808 0.66 0.66755
Target:  5'- uGGCGCCacacGCCGCGUgCGggugggcauguaUCGgaCCGGCCg -3'
miRNA:   3'- gCCGUGG----UGGCGCG-GC------------AGCg-GGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 134147 0.66 0.68615
Target:  5'- aCGGCACgACUGUGUgGUgGUCCAcacGCa -3'
miRNA:   3'- -GCCGUGgUGGCGCGgCAgCGGGU---CGg -5'
16115 5' -64.1 NC_004065.1 + 29507 0.66 0.68615
Target:  5'- aGGUACuCGgUGaCGCCGgCGCUgCAGCCg -3'
miRNA:   3'- gCCGUG-GUgGC-GCGGCaGCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 113683 0.66 0.648854
Target:  5'- -cGCucuCCAgcuucucucCCGaCGCCGUCGCCgCuGCCg -3'
miRNA:   3'- gcCGu--GGU---------GGC-GCGGCAGCGG-GuCGG- -5'
16115 5' -64.1 NC_004065.1 + 60341 0.66 0.658211
Target:  5'- cCGGCGCCguaCGCGuuGgugCGCaCGGUCa -3'
miRNA:   3'- -GCCGUGGug-GCGCggCa--GCGgGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.